No. words: 1213; after pruning: 1187


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.0 (1,1:573)  552  0.35 0.00 0.17  USDA027F_D03_BE500714Ta20P035C06P004B101F1_025.ab1        1   574 (43)  C USDA027R_D03_BE500714Ta20P035C06P004B101R1_025.ab1   (23)   573     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  282 nodes

 143 str. conn. components

Path
    1  C USDA027R_D03_BE500714Ta20P035C06P004B101R1_025.ab1   596 
   27    USDA027F_D03_BE500714Ta20P035C06P004B101F1_025.ab1     4 
   35  C USDA027R_D03_BE500714Ta20P035C06P004B101R1_025.ab1   562 
   51    USDA027F_D03_BE500714Ta20P035C06P004B101F1_025.ab1    28 
   59  C USDA027R_D03_BE500714Ta20P035C06P004B101R1_025.ab1   538 
   67    USDA027F_D03_BE500714Ta20P035C06P004B101F1_025.ab1    44 
   91  C USDA027R_D03_BE500714Ta20P035C06P004B101R1_025.ab1   506 
   95    USDA027F_D03_BE500714Ta20P035C06P004B101F1_025.ab1    72 
  119  C USDA027R_D03_BE500714Ta20P035C06P004B101R1_025.ab1   478 
  123    USDA027F_D03_BE500714Ta20P035C06P004B101F1_025.ab1   100 
  131  C USDA027R_D03_BE500714Ta20P035C06P004B101R1_025.ab1   466 
  147    USDA027F_D03_BE500714Ta20P035C06P004B101F1_025.ab1   124 
  179  C USDA027R_D03_BE500714Ta20P035C06P004B101R1_025.ab1   418 
  199    USDA027F_D03_BE500714Ta20P035C06P004B101F1_025.ab1   176 
  263  C USDA027R_D03_BE500714Ta20P035C06P004B101R1_025.ab1   334 
  271    USDA027F_D03_BE500714Ta20P035C06P004B101F1_025.ab1   248 
  275  C USDA027R_D03_BE500714Ta20P035C06P004B101R1_025.ab1   322 
  327    USDA027F_D03_BE500714Ta20P035C06P004B101F1_025.ab1   304 
  331  C USDA027R_D03_BE500714Ta20P035C06P004B101R1_025.ab1   266 
  347    USDA027F_D03_BE500714Ta20P035C06P004B101F1_025.ab1   324 
  351  C USDA027R_D03_BE500714Ta20P035C06P004B101R1_025.ab1   246 
  584    USDA027F_D03_BE500714Ta20P035C06P004B101F1_025.ab1   561 
Contig length: old 639, new 640

Contig length: old 640, new 640
New start: 0