No. words: 1203; after pruning: 1163


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 11.9 (1,1:564)  547  0.18 0.18 0.00  USDA027F_E03_BE500714Ta21P035C06P004B101F1_023.ab1        3   565 (51)  C USDA027R_E03_BE500714Ta21P035C06P004B101R1_023.ab1   (23)   564     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  278 nodes

 141 str. conn. components

Path
    1  C USDA027R_E03_BE500714Ta21P035C06P004B101R1_023.ab1   587 
   54    USDA027F_E03_BE500714Ta21P035C06P004B101F1_023.ab1    32 
   58  C USDA027R_E03_BE500714Ta21P035C06P004B101R1_023.ab1   530 
   74    USDA027F_E03_BE500714Ta21P035C06P004B101F1_023.ab1    52 
   86  C USDA027R_E03_BE500714Ta21P035C06P004B101R1_023.ab1   502 
   90    USDA027F_E03_BE500714Ta21P035C06P004B101F1_023.ab1    68 
  122  C USDA027R_E03_BE500714Ta21P035C06P004B101R1_023.ab1   466 
  218    USDA027F_E03_BE500714Ta21P035C06P004B101F1_023.ab1   196 
  238  C USDA027R_E03_BE500714Ta21P035C06P004B101R1_023.ab1   350 
  312    USDA027F_E03_BE500714Ta21P035C06P004B101F1_023.ab1   290 
  352  C USDA027R_E03_BE500714Ta21P035C06P004B101R1_023.ab1   236 
  360    USDA027F_E03_BE500714Ta21P035C06P004B101F1_023.ab1   338 
  376  C USDA027R_E03_BE500714Ta21P035C06P004B101R1_023.ab1   212 
  424    USDA027F_E03_BE500714Ta21P035C06P004B101F1_023.ab1   402 
  436  C USDA027R_E03_BE500714Ta21P035C06P004B101R1_023.ab1   152 
  440    USDA027F_E03_BE500714Ta21P035C06P004B101F1_023.ab1   418 
  452  C USDA027R_E03_BE500714Ta21P035C06P004B101R1_023.ab1   136 
  460    USDA027F_E03_BE500714Ta21P035C06P004B101F1_023.ab1   438 
  468  C USDA027R_E03_BE500714Ta21P035C06P004B101R1_023.ab1   120 
  488    USDA027F_E03_BE500714Ta21P035C06P004B101F1_023.ab1   466 
  492  C USDA027R_E03_BE500714Ta21P035C06P004B101R1_023.ab1    96 
  504    USDA027F_E03_BE500714Ta21P035C06P004B101F1_023.ab1   482 
  512  C USDA027R_E03_BE500714Ta21P035C06P004B101R1_023.ab1    76 
  548    USDA027F_E03_BE500714Ta21P035C06P004B101F1_023.ab1   526 
  564  C USDA027R_E03_BE500714Ta21P035C06P004B101R1_023.ab1    24 
  568    USDA027F_E03_BE500714Ta21P035C06P004B101F1_023.ab1   546 
Contig length: old 638, new 638

Contig length: old 638, new 638
New start: 0