No. words: 1220; after pruning: 1194


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.5 (1,1:581)  567  0.00 0.17 0.00  USDA027F_F03_BE500714Ta22P035C06P004B101F1_021.ab1        1   582 (41)  C USDA027R_F03_BE500714Ta22P035C06P004B101R1_021.ab1   (14)   583     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  288 nodes

 146 str. conn. components

Path
    1  C USDA027R_F03_BE500714Ta22P035C06P004B101R1_021.ab1   597 
   55    USDA027F_F03_BE500714Ta22P035C06P004B101F1_021.ab1    40 
   59  C USDA027R_F03_BE500714Ta22P035C06P004B101R1_021.ab1   539 
   91    USDA027F_F03_BE500714Ta22P035C06P004B101F1_021.ab1    76 
  131  C USDA027R_F03_BE500714Ta22P035C06P004B101R1_021.ab1   467 
  167    USDA027F_F03_BE500714Ta22P035C06P004B101F1_021.ab1   152 
  179  C USDA027R_F03_BE500714Ta22P035C06P004B101R1_021.ab1   419 
  199    USDA027F_F03_BE500714Ta22P035C06P004B101F1_021.ab1   184 
  247  C USDA027R_F03_BE500714Ta22P035C06P004B101R1_021.ab1   351 
  327    USDA027F_F03_BE500714Ta22P035C06P004B101F1_021.ab1   312 
  391  C USDA027R_F03_BE500714Ta22P035C06P004B101R1_021.ab1   207 
  403    USDA027F_F03_BE500714Ta22P035C06P004B101F1_021.ab1   388 
  443  C USDA027R_F03_BE500714Ta22P035C06P004B101R1_021.ab1   155 
  475    USDA027F_F03_BE500714Ta22P035C06P004B101F1_021.ab1   460 
  479  C USDA027R_F03_BE500714Ta22P035C06P004B101R1_021.ab1   119 
  503    USDA027F_F03_BE500714Ta22P035C06P004B101F1_021.ab1   488 
  507  C USDA027R_F03_BE500714Ta22P035C06P004B101R1_021.ab1    91 
  519    USDA027F_F03_BE500714Ta22P035C06P004B101F1_021.ab1   504 
  523  C USDA027R_F03_BE500714Ta22P035C06P004B101R1_021.ab1    75 
  547    USDA027F_F03_BE500714Ta22P035C06P004B101F1_021.ab1   532 
  563  C USDA027R_F03_BE500714Ta22P035C06P004B101R1_021.ab1    35 
  567    USDA027F_F03_BE500714Ta22P035C06P004B101F1_021.ab1   552 
Contig length: old 638, new 638

Contig length: old 638, new 638
New start: 0