No. words: 1227; after pruning: 1201


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.9 (1,1:578)  551  0.00 0.17 0.34  USDA027F_F06_BE500714Ta22P035D06P004B101F1_038.ab1        1   580 (43)  C USDA027R_F06_BE500714Ta22P035D06P004B101R1_038.ab1   (25)   579     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  282 nodes

 143 str. conn. components

Path
    1  C USDA027R_F06_BE500714Ta22P035D06P004B101R1_038.ab1   604 
   54    USDA027F_F06_BE500714Ta22P035D06P004B101F1_038.ab1    28 
   58  C USDA027R_F06_BE500714Ta22P035D06P004B101R1_038.ab1   547 
   86    USDA027F_F06_BE500714Ta22P035D06P004B101F1_038.ab1    60 
   90  C USDA027R_F06_BE500714Ta22P035D06P004B101R1_038.ab1   515 
   98    USDA027F_F06_BE500714Ta22P035D06P004B101F1_038.ab1    72 
  114  C USDA027R_F06_BE500714Ta22P035D06P004B101R1_038.ab1   491 
  130    USDA027F_F06_BE500714Ta22P035D06P004B101F1_038.ab1   104 
  146  C USDA027R_F06_BE500714Ta22P035D06P004B101R1_038.ab1   459 
  154    USDA027F_F06_BE500714Ta22P035D06P004B101F1_038.ab1   128 
  182  C USDA027R_F06_BE500714Ta22P035D06P004B101R1_038.ab1   423 
  190    USDA027F_F06_BE500714Ta22P035D06P004B101F1_038.ab1   164 
  250  C USDA027R_F06_BE500714Ta22P035D06P004B101R1_038.ab1   355 
  262    USDA027F_F06_BE500714Ta22P035D06P004B101F1_038.ab1   236 
  290  C USDA027R_F06_BE500714Ta22P035D06P004B101R1_038.ab1   315 
  310    USDA027F_F06_BE500714Ta22P035D06P004B101F1_038.ab1   284 
  322  C USDA027R_F06_BE500714Ta22P035D06P004B101R1_038.ab1   283 
  438    USDA027F_F06_BE500714Ta22P035D06P004B101F1_038.ab1   412 
  446  C USDA027R_F06_BE500714Ta22P035D06P004B101R1_038.ab1   159 
  510    USDA027F_F06_BE500714Ta22P035D06P004B101F1_038.ab1   484 
  514  C USDA027R_F06_BE500714Ta22P035D06P004B101R1_038.ab1    91 
  530    USDA027F_F06_BE500714Ta22P035D06P004B101F1_038.ab1   504 
  534  C USDA027R_F06_BE500714Ta22P035D06P004B101R1_038.ab1    71 
  582    USDA027F_F06_BE500714Ta22P035D06P004B101F1_038.ab1   556 
Contig length: old 648, new 649

Contig length: old 649, new 649
New start: 0