No. words: 1224; after pruning: 1198


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.6 (1,1:573)  558  0.00 0.00 0.17  USDA027F_G03_BE500714Ta23P035C06P004B101F1_019.ab1        1   574 (41)  C USDA027R_G03_BE500714Ta23P035C06P004B101R1_019.ab1   (36)   573     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  286 nodes

 145 str. conn. components

Path
    1  C USDA027R_G03_BE500714Ta23P035C06P004B101R1_019.ab1   609 
   64    USDA027F_G03_BE500714Ta23P035C06P004B101F1_019.ab1    28 
   72  C USDA027R_G03_BE500714Ta23P035C06P004B101R1_019.ab1   538 
   88    USDA027F_G03_BE500714Ta23P035C06P004B101F1_019.ab1    52 
   92  C USDA027R_G03_BE500714Ta23P035C06P004B101R1_019.ab1   518 
   96    USDA027F_G03_BE500714Ta23P035C06P004B101F1_019.ab1    60 
  104  C USDA027R_G03_BE500714Ta23P035C06P004B101R1_019.ab1   506 
  120    USDA027F_G03_BE500714Ta23P035C06P004B101F1_019.ab1    84 
  132  C USDA027R_G03_BE500714Ta23P035C06P004B101R1_019.ab1   478 
  180    USDA027F_G03_BE500714Ta23P035C06P004B101F1_019.ab1   144 
  192  C USDA027R_G03_BE500714Ta23P035C06P004B101R1_019.ab1   418 
  208    USDA027F_G03_BE500714Ta23P035C06P004B101F1_019.ab1   172 
  260  C USDA027R_G03_BE500714Ta23P035C06P004B101R1_019.ab1   350 
  348    USDA027F_G03_BE500714Ta23P035C06P004B101F1_019.ab1   312 
  356  C USDA027R_G03_BE500714Ta23P035C06P004B101R1_019.ab1   254 
  396    USDA027F_G03_BE500714Ta23P035C06P004B101F1_019.ab1   360 
  400  C USDA027R_G03_BE500714Ta23P035C06P004B101R1_019.ab1   210 
  436    USDA027F_G03_BE500714Ta23P035C06P004B101F1_019.ab1   400 
  440  C USDA027R_G03_BE500714Ta23P035C06P004B101R1_019.ab1   170 
  516    USDA027F_G03_BE500714Ta23P035C06P004B101F1_019.ab1   480 
  520  C USDA027R_G03_BE500714Ta23P035C06P004B101R1_019.ab1    90 
  588    USDA027F_G03_BE500714Ta23P035C06P004B101F1_019.ab1   552 
Contig length: old 650, new 651

Contig length: old 651, new 651
New start: 0