No. words: 1054; after pruning: 1028


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.4 (1,1:559)  413  1.79 0.00 0.00  USDA027F_G06_BE500714Ta23P035D06P004B101F1_036.ab1        1   447 (0)  C USDA027R_G06_BE500714Ta23P035D06P004B101R1_036.ab1   (47)   560   114 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  208 nodes

 106 str. conn. components

Path
    1  C USDA027R_G06_BE500714Ta23P035D06P004B101R1_036.ab1   607 
   66    USDA027F_G06_BE500714Ta23P035D06P004B101F1_036.ab1    19 
   70  C USDA027R_G06_BE500714Ta23P035D06P004B101R1_036.ab1   538 
   82    USDA027F_G06_BE500714Ta23P035D06P004B101F1_036.ab1    35 
   86  C USDA027R_G06_BE500714Ta23P035D06P004B101R1_036.ab1   522 
   98    USDA027F_G06_BE500714Ta23P035D06P004B101F1_036.ab1    51 
  106  C USDA027R_G06_BE500714Ta23P035D06P004B101R1_036.ab1   502 
  110    USDA027F_G06_BE500714Ta23P035D06P004B101F1_036.ab1    63 
  122  C USDA027R_G06_BE500714Ta23P035D06P004B101R1_036.ab1   486 
  126    USDA027F_G06_BE500714Ta23P035D06P004B101F1_036.ab1    79 
  142  C USDA027R_G06_BE500714Ta23P035D06P004B101R1_036.ab1   466 
  146    USDA027F_G06_BE500714Ta23P035D06P004B101F1_036.ab1    99 
  154  C USDA027R_G06_BE500714Ta23P035D06P004B101R1_036.ab1   454 
  162    USDA027F_G06_BE500714Ta23P035D06P004B101F1_036.ab1   115 
  166  C USDA027R_G06_BE500714Ta23P035D06P004B101R1_036.ab1   442 
  170    USDA027F_G06_BE500714Ta23P035D06P004B101F1_036.ab1   123 
  178  C USDA027R_G06_BE500714Ta23P035D06P004B101R1_036.ab1   430 
  186    USDA027F_G06_BE500714Ta23P035D06P004B101F1_036.ab1   139 
  210  C USDA027R_G06_BE500714Ta23P035D06P004B101R1_036.ab1   398 
  218    USDA027F_G06_BE500714Ta23P035D06P004B101F1_036.ab1   171 
  226  C USDA027R_G06_BE500714Ta23P035D06P004B101R1_036.ab1   382 
  246    USDA027F_G06_BE500714Ta23P035D06P004B101F1_036.ab1   199 
  250  C USDA027R_G06_BE500714Ta23P035D06P004B101R1_036.ab1   358 
  258    USDA027F_G06_BE500714Ta23P035D06P004B101F1_036.ab1   211 
  274  C USDA027R_G06_BE500714Ta23P035D06P004B101R1_036.ab1   334 
  309    USDA027F_G06_BE500714Ta23P035D06P004B101F1_036.ab1   262 
  313  C USDA027R_G06_BE500714Ta23P035D06P004B101R1_036.ab1   295 
Contig length: old 607, new 607

Contig length: old 607, new 607
New start: 0