No. words: 1100; after pruning: 1060


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 9.9 (1,1:580)  474  0.61 0.00 0.00  USDA027F_A01_BE500714Td01P035C06P004B101F1_015.ab1        2   493 (0)  C USDA027R_A01_BE500714Td01P035C06P004B101R1_015.ab1   (27)   580    89 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  238 nodes

 121 str. conn. components

Path
    1  C USDA027R_A01_BE500714Td01P035C06P004B101R1_015.ab1   607 
  115    USDA027F_A01_BE500714Td01P035C06P004B101F1_015.ab1    89 
  123  C USDA027R_A01_BE500714Td01P035C06P004B101R1_015.ab1   485 
  191    USDA027F_A01_BE500714Td01P035C06P004B101F1_015.ab1   165 
  223  C USDA027R_A01_BE500714Td01P035C06P004B101R1_015.ab1   385 
Contig length: old 607, new 607

Contig length: old 607, new 607
New start: 0