No. words: 1243; after pruning: 1217


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 10.6 (1,1:584)  559  0.00 0.17 0.17  USDA027F_A04_BE500714Td01P035D06P004B101F1_032.ab1        1   583 (40)  C USDA027R_A04_BE500714Td01P035D06P004B101R1_032.ab1   (35)   585     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  288 nodes

 146 str. conn. components

Path
    1  C USDA027R_A04_BE500714Td01P035D06P004B101R1_032.ab1   620 
  130    USDA027F_A04_BE500714Td01P035D06P004B101F1_032.ab1    94 
  134  C USDA027R_A04_BE500714Td01P035D06P004B101R1_032.ab1   487 
  162    USDA027F_A04_BE500714Td01P035D06P004B101F1_032.ab1   126 
  166  C USDA027R_A04_BE500714Td01P035D06P004B101R1_032.ab1   455 
  178    USDA027F_A04_BE500714Td01P035D06P004B101F1_032.ab1   142 
  190  C USDA027R_A04_BE500714Td01P035D06P004B101R1_032.ab1   431 
  250    USDA027F_A04_BE500714Td01P035D06P004B101F1_032.ab1   214 
  274  C USDA027R_A04_BE500714Td01P035D06P004B101R1_032.ab1   347 
  298    USDA027F_A04_BE500714Td01P035D06P004B101F1_032.ab1   262 
  302  C USDA027R_A04_BE500714Td01P035D06P004B101R1_032.ab1   319 
  378    USDA027F_A04_BE500714Td01P035D06P004B101F1_032.ab1   342 
  386  C USDA027R_A04_BE500714Td01P035D06P004B101R1_032.ab1   235 
  394    USDA027F_A04_BE500714Td01P035D06P004B101F1_032.ab1   358 
  398  C USDA027R_A04_BE500714Td01P035D06P004B101R1_032.ab1   223 
  422    USDA027F_A04_BE500714Td01P035D06P004B101F1_032.ab1   386 
  450  C USDA027R_A04_BE500714Td01P035D06P004B101R1_032.ab1   171 
  458    USDA027F_A04_BE500714Td01P035D06P004B101F1_032.ab1   422 
  470  C USDA027R_A04_BE500714Td01P035D06P004B101R1_032.ab1   151 
  502    USDA027F_A04_BE500714Td01P035D06P004B101F1_032.ab1   466 
  510  C USDA027R_A04_BE500714Td01P035D06P004B101R1_032.ab1   111 
  518    USDA027F_A04_BE500714Td01P035D06P004B101F1_032.ab1   482 
  530  C USDA027R_A04_BE500714Td01P035D06P004B101R1_032.ab1    91 
  542    USDA027F_A04_BE500714Td01P035D06P004B101F1_032.ab1   506 
  546  C USDA027R_A04_BE500714Td01P035D06P004B101R1_032.ab1    75 
  554    USDA027F_A04_BE500714Td01P035D06P004B101F1_032.ab1   518 
  562  C USDA027R_A04_BE500714Td01P035D06P004B101R1_032.ab1    59 
  590    USDA027F_A04_BE500714Td01P035D06P004B101F1_032.ab1   554 
Contig length: old 658, new 659

Contig length: old 659, new 659
New start: 0