No. words: 1149; after pruning: 1123


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 11.0 (1,1:573)  535  0.36 0.00 0.00  USDA027F_B01_BE500714Td02P035C06P004B101F1_013.ab1        2   553 (0)  C USDA027R_B01_BE500714Td02P035C06P004B101R1_013.ab1   (23)   573    22 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  270 nodes

 137 str. conn. components

Path
    1  C USDA027R_B01_BE500714Td02P035C06P004B101R1_013.ab1   596 
   55    USDA027F_B01_BE500714Td02P035C06P004B101F1_013.ab1    33 
   59  C USDA027R_B01_BE500714Td02P035C06P004B101R1_013.ab1   538 
   83    USDA027F_B01_BE500714Td02P035C06P004B101F1_013.ab1    61 
   87  C USDA027R_B01_BE500714Td02P035C06P004B101R1_013.ab1   510 
   95    USDA027F_B01_BE500714Td02P035C06P004B101F1_013.ab1    73 
   99  C USDA027R_B01_BE500714Td02P035C06P004B101R1_013.ab1   498 
  111    USDA027F_B01_BE500714Td02P035C06P004B101F1_013.ab1    89 
  119  C USDA027R_B01_BE500714Td02P035C06P004B101R1_013.ab1   478 
  167    USDA027F_B01_BE500714Td02P035C06P004B101F1_013.ab1   145 
  175  C USDA027R_B01_BE500714Td02P035C06P004B101R1_013.ab1   422 
Contig length: old 596, new 596

Contig length: old 596, new 596
New start: 0