No. words: 1232; after pruning: 1206


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.7 (1,1:579)  553  0.17 0.17 0.17  USDA027F_B04_BE500714Td02P035D06P004B101F1_030.ab1        1   580 (48)  C USDA027R_B04_BE500714Td02P035D06P004B101R1_030.ab1   (24)   580     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  282 nodes

 143 str. conn. components

Path
    1  C USDA027R_B04_BE500714Td02P035D06P004B101R1_030.ab1   604 
  147    USDA027F_B04_BE500714Td02P035D06P004B101F1_030.ab1   122 
  179  C USDA027R_B04_BE500714Td02P035D06P004B101R1_030.ab1   426 
  315    USDA027F_B04_BE500714Td02P035D06P004B101F1_030.ab1   290 
  347  C USDA027R_B04_BE500714Td02P035D06P004B101R1_030.ab1   258 
  363    USDA027F_B04_BE500714Td02P035D06P004B101F1_030.ab1   338 
  371  C USDA027R_B04_BE500714Td02P035D06P004B101R1_030.ab1   234 
  447    USDA027F_B04_BE500714Td02P035D06P004B101F1_030.ab1   422 
  455  C USDA027R_B04_BE500714Td02P035D06P004B101R1_030.ab1   150 
  495    USDA027F_B04_BE500714Td02P035D06P004B101F1_030.ab1   470 
  499  C USDA027R_B04_BE500714Td02P035D06P004B101R1_030.ab1   106 
  511    USDA027F_B04_BE500714Td02P035D06P004B101F1_030.ab1   486 
  515  C USDA027R_B04_BE500714Td02P035D06P004B101R1_030.ab1    90 
  527    USDA027F_B04_BE500714Td02P035D06P004B101F1_030.ab1   502 
  531  C USDA027R_B04_BE500714Td02P035D06P004B101R1_030.ab1    74 
  582    USDA027F_B04_BE500714Td02P035D06P004B101F1_030.ab1   557 
  592  C USDA027R_B04_BE500714Td02P035D06P004B101R1_030.ab1    14 
  600    USDA027F_B04_BE500714Td02P035D06P004B101F1_030.ab1   575 
Contig length: old 652, new 653

Contig length: old 653, new 653
New start: 0