No. words: 1246; after pruning: 1206


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.9 (1,1:585)  554  0.34 0.34 0.17  USDA027F_C04_BE500714Td03P035D06P004B101F1_028.ab1        1   586 (36)  C USDA027R_C04_BE500714Td03P035D06P004B101R1_028.ab1   (37)   587     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  280 nodes

 142 str. conn. components

Path
    1  C USDA027R_C04_BE500714Td03P035D06P004B101R1_028.ab1   624 
  126    USDA027F_C04_BE500714Td03P035D06P004B101F1_028.ab1    87 
  130  C USDA027R_C04_BE500714Td03P035D06P004B101R1_028.ab1   495 
  166    USDA027F_C04_BE500714Td03P035D06P004B101F1_028.ab1   127 
  194  C USDA027R_C04_BE500714Td03P035D06P004B101R1_028.ab1   431 
  218    USDA027F_C04_BE500714Td03P035D06P004B101F1_028.ab1   179 
  234  C USDA027R_C04_BE500714Td03P035D06P004B101R1_028.ab1   391 
  242    USDA027F_C04_BE500714Td03P035D06P004B101F1_028.ab1   203 
  298  C USDA027R_C04_BE500714Td03P035D06P004B101R1_028.ab1   327 
  310    USDA027F_C04_BE500714Td03P035D06P004B101F1_028.ab1   271 
  322  C USDA027R_C04_BE500714Td03P035D06P004B101R1_028.ab1   303 
  370    USDA027F_C04_BE500714Td03P035D06P004B101F1_028.ab1   331 
  398  C USDA027R_C04_BE500714Td03P035D06P004B101R1_028.ab1   227 
  442    USDA027F_C04_BE500714Td03P035D06P004B101F1_028.ab1   403 
  454  C USDA027R_C04_BE500714Td03P035D06P004B101R1_028.ab1   171 
  462    USDA027F_C04_BE500714Td03P035D06P004B101F1_028.ab1   423 
  466  C USDA027R_C04_BE500714Td03P035D06P004B101R1_028.ab1   159 
  486    USDA027F_C04_BE500714Td03P035D06P004B101F1_028.ab1   447 
  494  C USDA027R_C04_BE500714Td03P035D06P004B101R1_028.ab1   131 
  498    USDA027F_C04_BE500714Td03P035D06P004B101F1_028.ab1   459 
  514  C USDA027R_C04_BE500714Td03P035D06P004B101R1_028.ab1   111 
  518    USDA027F_C04_BE500714Td03P035D06P004B101F1_028.ab1   479 
  534  C USDA027R_C04_BE500714Td03P035D06P004B101R1_028.ab1    91 
  538    USDA027F_C04_BE500714Td03P035D06P004B101F1_028.ab1   499 
  546  C USDA027R_C04_BE500714Td03P035D06P004B101R1_028.ab1    79 
  562    USDA027F_C04_BE500714Td03P035D06P004B101F1_028.ab1   523 
  579  C USDA027R_C04_BE500714Td03P035D06P004B101R1_028.ab1    46 
  595    USDA027F_C04_BE500714Td03P035D06P004B101F1_028.ab1   556 
  613  C USDA027R_C04_BE500714Td03P035D06P004B101R1_028.ab1    13 
  617    USDA027F_C04_BE500714Td03P035D06P004B101F1_028.ab1   578 
Contig length: old 660, new 661

Contig length: old 661, new 661
New start: 0 
S Change at: 574; seg lengths: entry 1, contig 1