No. words: 1202; after pruning: 1162


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.5 (1,1:563)  551  0.18 0.00 0.00  USDA027F_D01_BE500714Td04P035C06P004B101F1_009.ab1        1   564 (51)  C USDA027R_D01_BE500714Td04P035C06P004B101R1_009.ab1   (23)   564     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  280 nodes

 142 str. conn. components

Path
    1  C USDA027R_D01_BE500714Td04P035C06P004B101R1_009.ab1   587 
   71    USDA027F_D01_BE500714Td04P035C06P004B101F1_009.ab1    48 
   91  C USDA027R_D01_BE500714Td04P035C06P004B101R1_009.ab1   497 
   95    USDA027F_D01_BE500714Td04P035C06P004B101F1_009.ab1    72 
  115  C USDA027R_D01_BE500714Td04P035C06P004B101R1_009.ab1   473 
  215    USDA027F_D01_BE500714Td04P035C06P004B101F1_009.ab1   192 
  263  C USDA027R_D01_BE500714Td04P035C06P004B101R1_009.ab1   325 
  271    USDA027F_D01_BE500714Td04P035C06P004B101F1_009.ab1   248 
  291  C USDA027R_D01_BE500714Td04P035C06P004B101R1_009.ab1   297 
  351    USDA027F_D01_BE500714Td04P035C06P004B101F1_009.ab1   328 
  363  C USDA027R_D01_BE500714Td04P035C06P004B101R1_009.ab1   225 
  423    USDA027F_D01_BE500714Td04P035C06P004B101F1_009.ab1   400 
  447  C USDA027R_D01_BE500714Td04P035C06P004B101R1_009.ab1   141 
  455    USDA027F_D01_BE500714Td04P035C06P004B101F1_009.ab1   432 
  475  C USDA027R_D01_BE500714Td04P035C06P004B101R1_009.ab1   113 
  491    USDA027F_D01_BE500714Td04P035C06P004B101F1_009.ab1   468 
  547  C USDA027R_D01_BE500714Td04P035C06P004B101R1_009.ab1    41 
  555    USDA027F_D01_BE500714Td04P035C06P004B101F1_009.ab1   532 
  563  C USDA027R_D01_BE500714Td04P035C06P004B101R1_009.ab1    25 
  567    USDA027F_D01_BE500714Td04P035C06P004B101F1_009.ab1   544 
Contig length: old 638, new 638

Contig length: old 638, new 638
New start: 0