No. words: 1221; after pruning: 1195


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.3 (1,1:577)  551  0.00 0.17 0.35  USDA027F_D04_BE500714Td04P035D06P004B101F1_026.ab1        1   579 (39)  C USDA027R_D04_BE500714Td04P035D06P004B101R1_026.ab1   (25)   578     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  282 nodes

 143 str. conn. components

Path
    1  C USDA027R_D04_BE500714Td04P035D06P004B101R1_026.ab1   603 
   79    USDA027F_D04_BE500714Td04P035D06P004B101F1_026.ab1    53 
   87  C USDA027R_D04_BE500714Td04P035D06P004B101R1_026.ab1   517 
   99    USDA027F_D04_BE500714Td04P035D06P004B101F1_026.ab1    73 
  103  C USDA027R_D04_BE500714Td04P035D06P004B101R1_026.ab1   501 
  111    USDA027F_D04_BE500714Td04P035D06P004B101F1_026.ab1    85 
  115  C USDA027R_D04_BE500714Td04P035D06P004B101R1_026.ab1   489 
  135    USDA027F_D04_BE500714Td04P035D06P004B101F1_026.ab1   109 
  163  C USDA027R_D04_BE500714Td04P035D06P004B101R1_026.ab1   441 
  175    USDA027F_D04_BE500714Td04P035D06P004B101F1_026.ab1   149 
  183  C USDA027R_D04_BE500714Td04P035D06P004B101R1_026.ab1   421 
  195    USDA027F_D04_BE500714Td04P035D06P004B101F1_026.ab1   169 
  223  C USDA027R_D04_BE500714Td04P035D06P004B101R1_026.ab1   381 
  231    USDA027F_D04_BE500714Td04P035D06P004B101F1_026.ab1   205 
  259  C USDA027R_D04_BE500714Td04P035D06P004B101R1_026.ab1   345 
  271    USDA027F_D04_BE500714Td04P035D06P004B101F1_026.ab1   245 
  359  C USDA027R_D04_BE500714Td04P035D06P004B101R1_026.ab1   245 
  367    USDA027F_D04_BE500714Td04P035D06P004B101F1_026.ab1   341 
  391  C USDA027R_D04_BE500714Td04P035D06P004B101R1_026.ab1   213 
  399    USDA027F_D04_BE500714Td04P035D06P004B101F1_026.ab1   373 
  403  C USDA027R_D04_BE500714Td04P035D06P004B101R1_026.ab1   201 
  411    USDA027F_D04_BE500714Td04P035D06P004B101F1_026.ab1   385 
  435  C USDA027R_D04_BE500714Td04P035D06P004B101R1_026.ab1   169 
  439    USDA027F_D04_BE500714Td04P035D06P004B101F1_026.ab1   413 
  443  C USDA027R_D04_BE500714Td04P035D06P004B101R1_026.ab1   161 
  475    USDA027F_D04_BE500714Td04P035D06P004B101F1_026.ab1   449 
  479  C USDA027R_D04_BE500714Td04P035D06P004B101R1_026.ab1   125 
  491    USDA027F_D04_BE500714Td04P035D06P004B101F1_026.ab1   465 
  507  C USDA027R_D04_BE500714Td04P035D06P004B101R1_026.ab1    97 
  511    USDA027F_D04_BE500714Td04P035D06P004B101F1_026.ab1   485 
  515  C USDA027R_D04_BE500714Td04P035D06P004B101R1_026.ab1    89 
  563    USDA027F_D04_BE500714Td04P035D06P004B101F1_026.ab1   537 
  575  C USDA027R_D04_BE500714Td04P035D06P004B101R1_026.ab1    29 
  579    USDA027F_D04_BE500714Td04P035D06P004B101F1_026.ab1   553 
Contig length: old 643, new 644

Contig length: old 644, new 644
New start: 0