No. words: 1193; after pruning: 1167


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.6 (1,1:568)  546  0.18 0.00 0.35  USDA027F_E01_BE500714Td05P035C06P004B101F1_007.ab1        1   570 (15)  C USDA027R_E01_BE500714Td05P035C06P004B101R1_007.ab1   (40)   568     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  274 nodes

 139 str. conn. components

Path
    1  C USDA027R_E01_BE500714Td05P035C06P004B101R1_007.ab1   608 
   64    USDA027F_E01_BE500714Td05P035C06P004B101F1_007.ab1    24 
   72  C USDA027R_E01_BE500714Td05P035C06P004B101R1_007.ab1   537 
   92    USDA027F_E01_BE500714Td05P035C06P004B101F1_007.ab1    52 
  104  C USDA027R_E01_BE500714Td05P035C06P004B101R1_007.ab1   505 
  112    USDA027F_E01_BE500714Td05P035C06P004B101F1_007.ab1    72 
  128  C USDA027R_E01_BE500714Td05P035C06P004B101R1_007.ab1   481 
  216    USDA027F_E01_BE500714Td05P035C06P004B101F1_007.ab1   176 
  236  C USDA027R_E01_BE500714Td05P035C06P004B101R1_007.ab1   373 
  240    USDA027F_E01_BE500714Td05P035C06P004B101F1_007.ab1   200 
  264  C USDA027R_E01_BE500714Td05P035C06P004B101R1_007.ab1   345 
  589    USDA027F_E01_BE500714Td05P035C06P004B101F1_007.ab1   549 
Contig length: old 624, new 625

Contig length: old 625, new 625
New start: 0