No. words: 1221; after pruning: 1181


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.9 (1,1:578)  551  0.17 0.17 0.34  USDA027F_E04_BE500714Td05P035D06P004B101F1_024.ab1        1   580 (37)  C USDA027R_E04_BE500714Td05P035D06P004B101R1_024.ab1   (25)   579     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  280 nodes

 142 str. conn. components

Path
    1  C USDA027R_E04_BE500714Td05P035D06P004B101R1_024.ab1   604 
  114    USDA027F_E04_BE500714Td05P035D06P004B101F1_024.ab1    88 
  130  C USDA027R_E04_BE500714Td05P035D06P004B101R1_024.ab1   475 
  154    USDA027F_E04_BE500714Td05P035D06P004B101F1_024.ab1   128 
  182  C USDA027R_E04_BE500714Td05P035D06P004B101R1_024.ab1   423 
  218    USDA027F_E04_BE500714Td05P035D06P004B101F1_024.ab1   192 
  310  C USDA027R_E04_BE500714Td05P035D06P004B101R1_024.ab1   295 
  350    USDA027F_E04_BE500714Td05P035D06P004B101F1_024.ab1   324 
  390  C USDA027R_E04_BE500714Td05P035D06P004B101R1_024.ab1   215 
  414    USDA027F_E04_BE500714Td05P035D06P004B101F1_024.ab1   388 
  434  C USDA027R_E04_BE500714Td05P035D06P004B101R1_024.ab1   171 
  446    USDA027F_E04_BE500714Td05P035D06P004B101F1_024.ab1   420 
  458  C USDA027R_E04_BE500714Td05P035D06P004B101R1_024.ab1   147 
  470    USDA027F_E04_BE500714Td05P035D06P004B101F1_024.ab1   444 
  502  C USDA027R_E04_BE500714Td05P035D06P004B101R1_024.ab1   103 
  506    USDA027F_E04_BE500714Td05P035D06P004B101F1_024.ab1   480 
  534  C USDA027R_E04_BE500714Td05P035D06P004B101R1_024.ab1    71 
  575    USDA027F_E04_BE500714Td05P035D06P004B101F1_024.ab1   549 
  579  C USDA027R_E04_BE500714Td05P035D06P004B101R1_024.ab1    26 
  583    USDA027F_E04_BE500714Td05P035D06P004B101F1_024.ab1   557 
Contig length: old 642, new 643

Contig length: old 643, new 643
New start: 0