No. words: 1205; after pruning: 1179


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.5 (1,1:571)  552  0.00 0.17 0.17  USDA027F_F01_BE500714Td06P035C06P004B101F1_005.ab1        1   572 (38)  C USDA027R_F01_BE500714Td06P035C06P004B101R1_005.ab1   (23)   572     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  280 nodes

 142 str. conn. components

Path
    1  C USDA027R_F01_BE500714Td06P035C06P004B101R1_005.ab1   595 
   68    USDA027F_F01_BE500714Td06P035C06P004B101F1_005.ab1    44 
  120  C USDA027R_F01_BE500714Td06P035C06P004B101R1_005.ab1   476 
  152    USDA027F_F01_BE500714Td06P035C06P004B101F1_005.ab1   128 
  180  C USDA027R_F01_BE500714Td06P035C06P004B101R1_005.ab1   416 
  188    USDA027F_F01_BE500714Td06P035C06P004B101F1_005.ab1   164 
  296  C USDA027R_F01_BE500714Td06P035C06P004B101R1_005.ab1   300 
  340    USDA027F_F01_BE500714Td06P035C06P004B101F1_005.ab1   316 
  396  C USDA027R_F01_BE500714Td06P035C06P004B101R1_005.ab1   200 
  404    USDA027F_F01_BE500714Td06P035C06P004B101F1_005.ab1   380 
  448  C USDA027R_F01_BE500714Td06P035C06P004B101R1_005.ab1   148 
  460    USDA027F_F01_BE500714Td06P035C06P004B101F1_005.ab1   436 
  560  C USDA027R_F01_BE500714Td06P035C06P004B101R1_005.ab1    36 
  568    USDA027F_F01_BE500714Td06P035C06P004B101F1_005.ab1   544 
Contig length: old 633, new 634

Contig length: old 634, new 634
New start: 0