No. words: 1225; after pruning: 1185


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.6 (1,1:578)  551  0.17 0.35 0.17  USDA027F_F04_BE500714Td06P035D06P004B101F1_022.ab1        1   579 (41)  C USDA027R_F04_BE500714Td06P035D06P004B101R1_022.ab1   (25)   580     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  280 nodes

 142 str. conn. components

Path
    1  C USDA027R_F04_BE500714Td06P035D06P004B101R1_022.ab1   605 
   66    USDA027F_F04_BE500714Td06P035D06P004B101F1_022.ab1    39 
   90  C USDA027R_F04_BE500714Td06P035D06P004B101R1_022.ab1   516 
  106    USDA027F_F04_BE500714Td06P035D06P004B101F1_022.ab1    79 
  118  C USDA027R_F04_BE500714Td06P035D06P004B101R1_022.ab1   488 
  150    USDA027F_F04_BE500714Td06P035D06P004B101F1_022.ab1   123 
  182  C USDA027R_F04_BE500714Td06P035D06P004B101R1_022.ab1   424 
  194    USDA027F_F04_BE500714Td06P035D06P004B101F1_022.ab1   167 
  198  C USDA027R_F04_BE500714Td06P035D06P004B101R1_022.ab1   408 
  206    USDA027F_F04_BE500714Td06P035D06P004B101F1_022.ab1   179 
  250  C USDA027R_F04_BE500714Td06P035D06P004B101R1_022.ab1   356 
  266    USDA027F_F04_BE500714Td06P035D06P004B101F1_022.ab1   239 
  302  C USDA027R_F04_BE500714Td06P035D06P004B101R1_022.ab1   304 
  322    USDA027F_F04_BE500714Td06P035D06P004B101F1_022.ab1   295 
  390  C USDA027R_F04_BE500714Td06P035D06P004B101R1_022.ab1   216 
  398    USDA027F_F04_BE500714Td06P035D06P004B101F1_022.ab1   371 
  402  C USDA027R_F04_BE500714Td06P035D06P004B101R1_022.ab1   204 
  414    USDA027F_F04_BE500714Td06P035D06P004B101F1_022.ab1   387 
  422  C USDA027R_F04_BE500714Td06P035D06P004B101R1_022.ab1   184 
  470    USDA027F_F04_BE500714Td06P035D06P004B101F1_022.ab1   443 
  482  C USDA027R_F04_BE500714Td06P035D06P004B101R1_022.ab1   124 
  486    USDA027F_F04_BE500714Td06P035D06P004B101F1_022.ab1   459 
  490  C USDA027R_F04_BE500714Td06P035D06P004B101R1_022.ab1   116 
  494    USDA027F_F04_BE500714Td06P035D06P004B101F1_022.ab1   467 
  502  C USDA027R_F04_BE500714Td06P035D06P004B101R1_022.ab1   104 
  506    USDA027F_F04_BE500714Td06P035D06P004B101F1_022.ab1   479 
  518  C USDA027R_F04_BE500714Td06P035D06P004B101R1_022.ab1    88 
  583    USDA027F_F04_BE500714Td06P035D06P004B101F1_022.ab1   556 
Contig length: old 646, new 647

Contig length: old 647, new 647
New start: 0