No. words: 1252; after pruning: 1198


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.2 (1,1:582)  551  0.68 0.00 0.34  USDA027F_G04_BE500714Td07P035D06P004B101F1_020.ab1        1   584 (49)  C USDA027R_G04_BE500714Td07P035D06P004B101R1_020.ab1   (37)   582     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  270 nodes

 137 str. conn. components

Path
    1  C USDA027R_G04_BE500714Td07P035D06P004B101R1_020.ab1   619 
   97    USDA027F_G04_BE500714Td07P035D06P004B101F1_020.ab1    60 
  101  C USDA027R_G04_BE500714Td07P035D06P004B101R1_020.ab1   519 
  125    USDA027F_G04_BE500714Td07P035D06P004B101F1_020.ab1    88 
  129  C USDA027R_G04_BE500714Td07P035D06P004B101R1_020.ab1   491 
  141    USDA027F_G04_BE500714Td07P035D06P004B101F1_020.ab1   104 
  157  C USDA027R_G04_BE500714Td07P035D06P004B101R1_020.ab1   463 
  165    USDA027F_G04_BE500714Td07P035D06P004B101F1_020.ab1   128 
  173  C USDA027R_G04_BE500714Td07P035D06P004B101R1_020.ab1   447 
  181    USDA027F_G04_BE500714Td07P035D06P004B101F1_020.ab1   144 
  193  C USDA027R_G04_BE500714Td07P035D06P004B101R1_020.ab1   427 
  241    USDA027F_G04_BE500714Td07P035D06P004B101F1_020.ab1   204 
  293  C USDA027R_G04_BE500714Td07P035D06P004B101R1_020.ab1   327 
  509    USDA027F_G04_BE500714Td07P035D06P004B101F1_020.ab1   472 
  513  C USDA027R_G04_BE500714Td07P035D06P004B101R1_020.ab1   107 
  525    USDA027F_G04_BE500714Td07P035D06P004B101F1_020.ab1   488 
  529  C USDA027R_G04_BE500714Td07P035D06P004B101R1_020.ab1    91 
  595    USDA027F_G04_BE500714Td07P035D06P004B101F1_020.ab1   558 
Contig length: old 669, new 670

Contig length: old 670, new 670
New start: 0