No. words: 1005; after pruning: 951


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.7 (1,1:558)  384  0.49 0.00 0.49  USDA027F_H01_BE500714Td08P035C06P004B101F1_001.ab1      157   561 (41)  C USDA027R_H01_BE500714Td08P035C06P004B101R1_001.ab1   (0)   403     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  192 nodes

 98 str. conn. components

Path
    1    USDA027F_H01_BE500714Td08P035C06P004B101F1_001.ab1     1 
  228  C USDA027R_H01_BE500714Td08P035C06P004B101R1_001.ab1   332 
  236    USDA027F_H01_BE500714Td08P035C06P004B101F1_001.ab1   236 
  256  C USDA027R_H01_BE500714Td08P035C06P004B101R1_001.ab1   304 
  324    USDA027F_H01_BE500714Td08P035C06P004B101F1_001.ab1   324 
  328  C USDA027R_H01_BE500714Td08P035C06P004B101R1_001.ab1   232 
  439    USDA027F_H01_BE500714Td08P035C06P004B101F1_001.ab1   439 
  443  C USDA027R_H01_BE500714Td08P035C06P004B101R1_001.ab1   117 
  447    USDA027F_H01_BE500714Td08P035C06P004B101F1_001.ab1   447 
  479  C USDA027R_H01_BE500714Td08P035C06P004B101R1_001.ab1    81 
  483    USDA027F_H01_BE500714Td08P035C06P004B101F1_001.ab1   483 
Contig length: old 602, new 602

Contig length: old 602, new 602
New start: 0