No. words: 1175; after pruning: 1149


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.3 (1,1:563)  547  0.35 0.00 0.00  USDA027F_A02_BE500714Td09P035C06P004B101F1_016.ab1        1   564 (24)  C USDA027R_A02_BE500714Td09P035C06P004B101R1_016.ab1   (23)   564     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  280 nodes

 142 str. conn. components

Path
    1  C USDA027R_A02_BE500714Td09P035C06P004B101R1_016.ab1   587 
   55    USDA027F_A02_BE500714Td09P035C06P004B101F1_016.ab1    32 
   59  C USDA027R_A02_BE500714Td09P035C06P004B101R1_016.ab1   529 
   71    USDA027F_A02_BE500714Td09P035C06P004B101F1_016.ab1    48 
   87  C USDA027R_A02_BE500714Td09P035C06P004B101R1_016.ab1   501 
   95    USDA027F_A02_BE500714Td09P035C06P004B101F1_016.ab1    72 
  119  C USDA027R_A02_BE500714Td09P035C06P004B101R1_016.ab1   469 
  155    USDA027F_A02_BE500714Td09P035C06P004B101F1_016.ab1   132 
  179  C USDA027R_A02_BE500714Td09P035C06P004B101R1_016.ab1   409 
  203    USDA027F_A02_BE500714Td09P035C06P004B101F1_016.ab1   180 
  215  C USDA027R_A02_BE500714Td09P035C06P004B101R1_016.ab1   373 
  223    USDA027F_A02_BE500714Td09P035C06P004B101F1_016.ab1   200 
  235  C USDA027R_A02_BE500714Td09P035C06P004B101R1_016.ab1   353 
  239    USDA027F_A02_BE500714Td09P035C06P004B101F1_016.ab1   216 
  251  C USDA027R_A02_BE500714Td09P035C06P004B101R1_016.ab1   337 
  271    USDA027F_A02_BE500714Td09P035C06P004B101F1_016.ab1   248 
  279  C USDA027R_A02_BE500714Td09P035C06P004B101R1_016.ab1   309 
  584    USDA027F_A02_BE500714Td09P035C06P004B101F1_016.ab1   561 
Contig length: old 611, new 611

Contig length: old 611, new 611
New start: 0