No. words: 1203; after pruning: 1177


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.4 (1,1:562)  548  0.00 0.18 0.00  USDA027F_B02_BE500714Td10P035C06P004B101F1_014.ab1        1   563 (53)  C USDA027R_B02_BE500714Td10P035C06P004B101R1_014.ab1   (23)   564     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  280 nodes

 142 str. conn. components

Path
    1  C USDA027R_B02_BE500714Td10P035C06P004B101R1_014.ab1   587 
   68    USDA027F_B02_BE500714Td10P035C06P004B101F1_014.ab1    44 
   88  C USDA027R_B02_BE500714Td10P035C06P004B101R1_014.ab1   500 
   96    USDA027F_B02_BE500714Td10P035C06P004B101F1_014.ab1    72 
  100  C USDA027R_B02_BE500714Td10P035C06P004B101R1_014.ab1   488 
  112    USDA027F_B02_BE500714Td10P035C06P004B101F1_014.ab1    88 
  116  C USDA027R_B02_BE500714Td10P035C06P004B101R1_014.ab1   472 
  356    USDA027F_B02_BE500714Td10P035C06P004B101F1_014.ab1   332 
  376  C USDA027R_B02_BE500714Td10P035C06P004B101R1_014.ab1   212 
  456    USDA027F_B02_BE500714Td10P035C06P004B101F1_014.ab1   432 
  468  C USDA027R_B02_BE500714Td10P035C06P004B101R1_014.ab1   120 
  504    USDA027F_B02_BE500714Td10P035C06P004B101F1_014.ab1   480 
  512  C USDA027R_B02_BE500714Td10P035C06P004B101R1_014.ab1    76 
  520    USDA027F_B02_BE500714Td10P035C06P004B101F1_014.ab1   496 
  524  C USDA027R_B02_BE500714Td10P035C06P004B101R1_014.ab1    64 
  556    USDA027F_B02_BE500714Td10P035C06P004B101F1_014.ab1   532 
  560  C USDA027R_B02_BE500714Td10P035C06P004B101R1_014.ab1    28 
  572    USDA027F_B02_BE500714Td10P035C06P004B101F1_014.ab1   548 
Contig length: old 640, new 640

Contig length: old 640, new 640
New start: 0