No. words: 1231; after pruning: 1205


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 9.8 (1,1:578)  553  0.00 0.17 0.17  USDA027F_B05_BE500714Td10P035D06P004B101F1_045.ab1        1   577 (50)  C USDA027R_B05_BE500714Td10P035D06P004B101R1_045.ab1   (25)   579     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  284 nodes

 144 str. conn. components

Path
    1  C USDA027R_B05_BE500714Td10P035D06P004B101R1_045.ab1   604 
   88    USDA027F_B05_BE500714Td10P035D06P004B101F1_045.ab1    62 
   92  C USDA027R_B05_BE500714Td10P035D06P004B101R1_045.ab1   513 
  112    USDA027F_B05_BE500714Td10P035D06P004B101F1_045.ab1    86 
  116  C USDA027R_B05_BE500714Td10P035D06P004B101R1_045.ab1   489 
  120    USDA027F_B05_BE500714Td10P035D06P004B101F1_045.ab1    94 
  132  C USDA027R_B05_BE500714Td10P035D06P004B101R1_045.ab1   473 
  152    USDA027F_B05_BE500714Td10P035D06P004B101F1_045.ab1   126 
  180  C USDA027R_B05_BE500714Td10P035D06P004B101R1_045.ab1   425 
  196    USDA027F_B05_BE500714Td10P035D06P004B101F1_045.ab1   170 
  200  C USDA027R_B05_BE500714Td10P035D06P004B101R1_045.ab1   405 
  204    USDA027F_B05_BE500714Td10P035D06P004B101F1_045.ab1   178 
  212  C USDA027R_B05_BE500714Td10P035D06P004B101R1_045.ab1   393 
  216    USDA027F_B05_BE500714Td10P035D06P004B101F1_045.ab1   190 
  252  C USDA027R_B05_BE500714Td10P035D06P004B101R1_045.ab1   353 
  280    USDA027F_B05_BE500714Td10P035D06P004B101F1_045.ab1   254 
  292  C USDA027R_B05_BE500714Td10P035D06P004B101R1_045.ab1   313 
  300    USDA027F_B05_BE500714Td10P035D06P004B101F1_045.ab1   274 
  316  C USDA027R_B05_BE500714Td10P035D06P004B101R1_045.ab1   289 
  344    USDA027F_B05_BE500714Td10P035D06P004B101F1_045.ab1   318 
  352  C USDA027R_B05_BE500714Td10P035D06P004B101R1_045.ab1   253 
  360    USDA027F_B05_BE500714Td10P035D06P004B101F1_045.ab1   334 
  392  C USDA027R_B05_BE500714Td10P035D06P004B101R1_045.ab1   213 
  412    USDA027F_B05_BE500714Td10P035D06P004B101F1_045.ab1   386 
  416  C USDA027R_B05_BE500714Td10P035D06P004B101R1_045.ab1   189 
  424    USDA027F_B05_BE500714Td10P035D06P004B101F1_045.ab1   398 
  432  C USDA027R_B05_BE500714Td10P035D06P004B101R1_045.ab1   173 
  472    USDA027F_B05_BE500714Td10P035D06P004B101F1_045.ab1   446 
  476  C USDA027R_B05_BE500714Td10P035D06P004B101R1_045.ab1   129 
  480    USDA027F_B05_BE500714Td10P035D06P004B101F1_045.ab1   454 
  488  C USDA027R_B05_BE500714Td10P035D06P004B101R1_045.ab1   117 
  512    USDA027F_B05_BE500714Td10P035D06P004B101F1_045.ab1   486 
  516  C USDA027R_B05_BE500714Td10P035D06P004B101R1_045.ab1    89 
  528    USDA027F_B05_BE500714Td10P035D06P004B101F1_045.ab1   502 
  532  C USDA027R_B05_BE500714Td10P035D06P004B101R1_045.ab1    73 
  584    USDA027F_B05_BE500714Td10P035D06P004B101F1_045.ab1   558 
Contig length: old 652, new 653

Contig length: old 653, new 653
New start: 0