No. words: 1834; after pruning: 1794


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 19.4 (1,1:889)  847  0.34 0.11 0.00  USDA011F_E05_BE518358At01P017H04P017H10F1_039.ab1        1   889 (23)  C USDA011R_E05_BE518358At01P017H04P017H10R1_039.ab1   (32)   890     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  436 nodes

 220 str. conn. components

Path
    1  C USDA011R_E05_BE518358At01P017H04P017H10R1_039.ab1   922 
   36    USDA011F_E05_BE518358At01P017H04P017H10F1_039.ab1     4 
  580  C USDA011R_E05_BE518358At01P017H04P017H10R1_039.ab1   342 
  612    USDA011F_E05_BE518358At01P017H04P017H10F1_039.ab1   580 
  616  C USDA011R_E05_BE518358At01P017H04P017H10R1_039.ab1   306 
  917    USDA011F_E05_BE518358At01P017H04P017H10F1_039.ab1   885 
Contig length: old 944, new 944

Contig length: old 944, new 944
New start: 0