No. words: 1612; after pruning: 1586


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.9 (1,1:853)  718  0.40 0.13 0.00  USDA011F_H05_BE518358Ld02P017H04P017H10F1_033.ab1       67   823 (0)  C USDA011R_H05_BE518358Ld02P017H04P017H10R1_033.ab1   (0)   789    32 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  368 nodes

 186 str. conn. components

Path
    1    USDA011F_H05_BE518358Ld02P017H04P017H10F1_033.ab1     1 
  428  C USDA011R_H05_BE518358Ld02P017H04P017H10R1_033.ab1   427 
  436    USDA011F_H05_BE518358Ld02P017H04P017H10F1_033.ab1   436 
  452  C USDA011R_H05_BE518358Ld02P017H04P017H10R1_033.ab1   403 
  456    USDA011F_H05_BE518358Ld02P017H04P017H10F1_033.ab1   456 
  548  C USDA011R_H05_BE518358Ld02P017H04P017H10R1_033.ab1   307 
  802    USDA011F_H05_BE518358Ld02P017H04P017H10F1_033.ab1   802 
  811  C USDA011R_H05_BE518358Ld02P017H04P017H10R1_033.ab1    44 
Contig length: old 854, new 854

Contig length: old 854, new 854
New start: 0 
S Change at: 766; seg lengths: entry 1, contig 1