No. words: 1621; after pruning: 1581


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.1 (1,1:771)  743  0.13 0.00 0.00  USDA034F_H03_BE518358Sn24P035F06P017H101F1_017.ab1        1   772 (40)  C USDA034R_H03_BE518358Sn24P035F06P017H101R1_017.ab1   (37)   772     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  386 nodes

 195 str. conn. components

Path
    1  C USDA034R_H03_BE518358Sn24P035F06P017H101R1_017.ab1   809 
   42    USDA034F_H03_BE518358Sn24P035F06P017H101F1_017.ab1     5 
  182  C USDA034R_H03_BE518358Sn24P035F06P017H101R1_017.ab1   628 
  190    USDA034F_H03_BE518358Sn24P035F06P017H101F1_017.ab1   153 
  214  C USDA034R_H03_BE518358Sn24P035F06P017H101R1_017.ab1   596 
  222    USDA034F_H03_BE518358Sn24P035F06P017H101F1_017.ab1   185 
  374  C USDA034R_H03_BE518358Sn24P035F06P017H101R1_017.ab1   436 
  378    USDA034F_H03_BE518358Sn24P035F06P017H101F1_017.ab1   341 
  446  C USDA034R_H03_BE518358Sn24P035F06P017H101R1_017.ab1   364 
  454    USDA034F_H03_BE518358Sn24P035F06P017H101F1_017.ab1   417 
  462  C USDA034R_H03_BE518358Sn24P035F06P017H101R1_017.ab1   348 
  466    USDA034F_H03_BE518358Sn24P035F06P017H101F1_017.ab1   429 
  470  C USDA034R_H03_BE518358Sn24P035F06P017H101R1_017.ab1   340 
  478    USDA034F_H03_BE518358Sn24P035F06P017H101F1_017.ab1   441 
  486  C USDA034R_H03_BE518358Sn24P035F06P017H101R1_017.ab1   324 
  518    USDA034F_H03_BE518358Sn24P035F06P017H101F1_017.ab1   481 
  538  C USDA034R_H03_BE518358Sn24P035F06P017H101R1_017.ab1   272 
  646    USDA034F_H03_BE518358Sn24P035F06P017H101F1_017.ab1   609 
  654  C USDA034R_H03_BE518358Sn24P035F06P017H101R1_017.ab1   156 
  738    USDA034F_H03_BE518358Sn24P035F06P017H101F1_017.ab1   701 
  750  C USDA034R_H03_BE518358Sn24P035F06P017H101R1_017.ab1    60 
  806    USDA034F_H03_BE518358Sn24P035F06P017H101F1_017.ab1   769 
Contig length: old 849, new 849

Contig length: old 849, new 849
New start: 0