No. words: 1160; after pruning: 1134


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.6 (1,1:756)  385  0.74 0.00 0.00  USDA029F_H09_BE518358Sn24P043E12P017H101F1_065.ab1       42   444 (0)  C USDA029R_H09_BE518358Sn24P043E12P017H101R1_065.ab1   (0)   716   314 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  192 nodes

 98 str. conn. components

Path
    1    USDA029F_H09_BE518358Sn24P043E12P017H101F1_065.ab1     1 
   57  C USDA029R_H09_BE518358Sn24P043E12P017H101R1_065.ab1   701 
   74    USDA029F_H09_BE518358Sn24P043E12P017H101F1_065.ab1    74 
   90  C USDA029R_H09_BE518358Sn24P043E12P017H101R1_065.ab1   668 
   94    USDA029F_H09_BE518358Sn24P043E12P017H101F1_065.ab1    94 
  126  C USDA029R_H09_BE518358Sn24P043E12P017H101R1_065.ab1   632 
  134    USDA029F_H09_BE518358Sn24P043E12P017H101F1_065.ab1   134 
  158  C USDA029R_H09_BE518358Sn24P043E12P017H101R1_065.ab1   600 
  166    USDA029F_H09_BE518358Sn24P043E12P017H101F1_065.ab1   166 
  178  C USDA029R_H09_BE518358Sn24P043E12P017H101R1_065.ab1   580 
  182    USDA029F_H09_BE518358Sn24P043E12P017H101F1_065.ab1   182 
  206  C USDA029R_H09_BE518358Sn24P043E12P017H101R1_065.ab1   552 
  214    USDA029F_H09_BE518358Sn24P043E12P017H101F1_065.ab1   214 
  298  C USDA029R_H09_BE518358Sn24P043E12P017H101R1_065.ab1   460 
  306    USDA029F_H09_BE518358Sn24P043E12P017H101F1_065.ab1   306 
  330  C USDA029R_H09_BE518358Sn24P043E12P017H101R1_065.ab1   428 
  338    USDA029F_H09_BE518358Sn24P043E12P017H101F1_065.ab1   338 
  354  C USDA029R_H09_BE518358Sn24P043E12P017H101R1_065.ab1   404 
  362    USDA029F_H09_BE518358Sn24P043E12P017H101F1_065.ab1   362 
  366  C USDA029R_H09_BE518358Sn24P043E12P017H101R1_065.ab1   392 
  382    USDA029F_H09_BE518358Sn24P043E12P017H101F1_065.ab1   382 
  386  C USDA029R_H09_BE518358Sn24P043E12P017H101R1_065.ab1   372 
  414    USDA029F_H09_BE518358Sn24P043E12P017H101F1_065.ab1   414 
  418  C USDA029R_H09_BE518358Sn24P043E12P017H101R1_065.ab1   340 
Contig length: old 757, new 757

Contig length: old 757, new 757
New start: 0