No. words: 1641; after pruning: 1615


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 15.8 (1,1:778)  743  0.00 0.00 0.13  USDA034F_C02_BE518358Ta11P035F06P017H101F1_012.ab1        1   777 (39)  C USDA034R_C02_BE518358Ta11P035F06P017H101R1_012.ab1   (47)   778     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  388 nodes

 196 str. conn. components

Path
    1  C USDA034R_C02_BE518358Ta11P035F06P017H101R1_012.ab1   825 
   56    USDA034F_C02_BE518358Ta11P035F06P017H101F1_012.ab1     9 
   64  C USDA034R_C02_BE518358Ta11P035F06P017H101R1_012.ab1   762 
   68    USDA034F_C02_BE518358Ta11P035F06P017H101F1_012.ab1    21 
   84  C USDA034R_C02_BE518358Ta11P035F06P017H101R1_012.ab1   742 
   88    USDA034F_C02_BE518358Ta11P035F06P017H101F1_012.ab1    41 
  120  C USDA034R_C02_BE518358Ta11P035F06P017H101R1_012.ab1   706 
  200    USDA034F_C02_BE518358Ta11P035F06P017H101F1_012.ab1   153 
  204  C USDA034R_C02_BE518358Ta11P035F06P017H101R1_012.ab1   622 
  216    USDA034F_C02_BE518358Ta11P035F06P017H101F1_012.ab1   169 
  236  C USDA034R_C02_BE518358Ta11P035F06P017H101R1_012.ab1   590 
  244    USDA034F_C02_BE518358Ta11P035F06P017H101F1_012.ab1   197 
  260  C USDA034R_C02_BE518358Ta11P035F06P017H101R1_012.ab1   566 
  804    USDA034F_C02_BE518358Ta11P035F06P017H101F1_012.ab1   757 
Contig length: old 862, new 863

Contig length: old 863, new 863
New start: 0