No. words: 1488; after pruning: 1448


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.0 (1,1:768)  670  0.98 0.00 0.00  USDA029F_C08_BE518358Ta11P043E12P017H101F1_060.ab1       58   769 (7)  C USDA029R_C08_BE518358Ta11P043E12P017H101R1_060.ab1   (0)   712     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  340 nodes

 172 str. conn. components

Path
    1    USDA029F_C08_BE518358Ta11P043E12P017H101F1_060.ab1     1 
  468  C USDA029R_C08_BE518358Ta11P043E12P017H101R1_060.ab1   302 
  488    USDA029F_C08_BE518358Ta11P043E12P017H101F1_060.ab1   488 
  500  C USDA029R_C08_BE518358Ta11P043E12P017H101R1_060.ab1   270 
  568    USDA029F_C08_BE518358Ta11P043E12P017H101F1_060.ab1   568 
  572  C USDA029R_C08_BE518358Ta11P043E12P017H101R1_060.ab1   198 
  765    USDA029F_C08_BE518358Ta11P043E12P017H101F1_060.ab1   765 
Contig length: old 776, new 776

Contig length: old 776, new 776
New start: 0