No. words: 1377; after pruning: 1337


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.2 (1,1:762)  588  0.65 0.00 0.00  USDA029F_F08_BE518358Ta14P043E12P017H101F1_054.ab1       40   653 (0)  C USDA029R_F08_BE518358Ta14P043E12P017H101R1_054.ab1   (0)   724   111 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  296 nodes

 150 str. conn. components

Path
    1    USDA029F_F08_BE518358Ta14P043E12P017H101F1_054.ab1     1 
   63  C USDA029R_F08_BE518358Ta14P043E12P017H101R1_054.ab1   701 
   71    USDA029F_F08_BE518358Ta14P043E12P017H101F1_054.ab1    71 
   83  C USDA029R_F08_BE518358Ta14P043E12P017H101R1_054.ab1   681 
   87    USDA029F_F08_BE518358Ta14P043E12P017H101F1_054.ab1    87 
  215  C USDA029R_F08_BE518358Ta14P043E12P017H101R1_054.ab1   549 
  223    USDA029F_F08_BE518358Ta14P043E12P017H101F1_054.ab1   223 
  311  C USDA029R_F08_BE518358Ta14P043E12P017H101R1_054.ab1   453 
  319    USDA029F_F08_BE518358Ta14P043E12P017H101F1_054.ab1   319 
  323  C USDA029R_F08_BE518358Ta14P043E12P017H101R1_054.ab1   441 
  327    USDA029F_F08_BE518358Ta14P043E12P017H101F1_054.ab1   327 
  363  C USDA029R_F08_BE518358Ta14P043E12P017H101R1_054.ab1   401 
  375    USDA029F_F08_BE518358Ta14P043E12P017H101F1_054.ab1   375 
  379  C USDA029R_F08_BE518358Ta14P043E12P017H101R1_054.ab1   385 
  387    USDA029F_F08_BE518358Ta14P043E12P017H101F1_054.ab1   387 
  395  C USDA029R_F08_BE518358Ta14P043E12P017H101R1_054.ab1   369 
  411    USDA029F_F08_BE518358Ta14P043E12P017H101F1_054.ab1   411 
  426  C USDA029R_F08_BE518358Ta14P043E12P017H101R1_054.ab1   338 
Contig length: old 763, new 763

Contig length: old 763, new 763
New start: 0