No. words: 1634; after pruning: 1608


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.2 (1,1:772)  740  0.00 0.00 0.13  USDA034F_G02_BE518358Ta15P035F06P017H101F1_004.ab1        1   773 (39)  C USDA034R_G02_BE518358Ta15P035F06P017H101R1_004.ab1   (50)   772     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  386 nodes

 195 str. conn. components

Path
    1  C USDA034R_G02_BE518358Ta15P035F06P017H101R1_004.ab1   822 
   55    USDA034F_G02_BE518358Ta15P035F06P017H101F1_004.ab1     5 
   67  C USDA034R_G02_BE518358Ta15P035F06P017H101R1_004.ab1   756 
   75    USDA034F_G02_BE518358Ta15P035F06P017H101F1_004.ab1    25 
   87  C USDA034R_G02_BE518358Ta15P035F06P017H101R1_004.ab1   736 
   91    USDA034F_G02_BE518358Ta15P035F06P017H101F1_004.ab1    41 
  139  C USDA034R_G02_BE518358Ta15P035F06P017H101R1_004.ab1   684 
  147    USDA034F_G02_BE518358Ta15P035F06P017H101F1_004.ab1    97 
  151  C USDA034R_G02_BE518358Ta15P035F06P017H101R1_004.ab1   672 
  223    USDA034F_G02_BE518358Ta15P035F06P017H101F1_004.ab1   173 
  239  C USDA034R_G02_BE518358Ta15P035F06P017H101R1_004.ab1   584 
  251    USDA034F_G02_BE518358Ta15P035F06P017H101F1_004.ab1   201 
  283  C USDA034R_G02_BE518358Ta15P035F06P017H101R1_004.ab1   540 
  287    USDA034F_G02_BE518358Ta15P035F06P017H101F1_004.ab1   237 
  291  C USDA034R_G02_BE518358Ta15P035F06P017H101R1_004.ab1   532 
  295    USDA034F_G02_BE518358Ta15P035F06P017H101F1_004.ab1   245 
  299  C USDA034R_G02_BE518358Ta15P035F06P017H101R1_004.ab1   524 
  711    USDA034F_G02_BE518358Ta15P035F06P017H101F1_004.ab1   661 
  715  C USDA034R_G02_BE518358Ta15P035F06P017H101R1_004.ab1   108 
  811    USDA034F_G02_BE518358Ta15P035F06P017H101F1_004.ab1   761 
Contig length: old 861, new 862

Contig length: old 862, new 862
New start: 0