No. words: 1508; after pruning: 1482


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.0 (1,1:772)  664  0.57 0.14 0.00  USDA029F_G08_BE518358Ta15P043E12P017H101F1_052.ab1        1   701 (0)  C USDA029R_G08_BE518358Ta15P043E12P017H101R1_052.ab1   (33)   774    73 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  336 nodes

 170 str. conn. components

Path
    1  C USDA029R_G08_BE518358Ta15P043E12P017H101R1_052.ab1   807 
   45    USDA029F_G08_BE518358Ta15P043E12P017H101F1_052.ab1    11 
  176  C USDA029R_G08_BE518358Ta15P043E12P017H101R1_052.ab1   632 
  180    USDA029F_G08_BE518358Ta15P043E12P017H101F1_052.ab1   146 
  244  C USDA029R_G08_BE518358Ta15P043E12P017H101R1_052.ab1   564 
  248    USDA029F_G08_BE518358Ta15P043E12P017H101F1_052.ab1   214 
  340  C USDA029R_G08_BE518358Ta15P043E12P017H101R1_052.ab1   468 
  360    USDA029F_G08_BE518358Ta15P043E12P017H101F1_052.ab1   326 
  372  C USDA029R_G08_BE518358Ta15P043E12P017H101R1_052.ab1   436 
  388    USDA029F_G08_BE518358Ta15P043E12P017H101F1_052.ab1   354 
  420  C USDA029R_G08_BE518358Ta15P043E12P017H101R1_052.ab1   388 
  428    USDA029F_G08_BE518358Ta15P043E12P017H101F1_052.ab1   394 
  440  C USDA029R_G08_BE518358Ta15P043E12P017H101R1_052.ab1   368 
  460    USDA029F_G08_BE518358Ta15P043E12P017H101F1_052.ab1   426 
  468  C USDA029R_G08_BE518358Ta15P043E12P017H101R1_052.ab1   340 
Contig length: old 807, new 807

Contig length: old 807, new 807
New start: 0