No. words: 1487; after pruning: 1461


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.2 (1,1:766)  653  1.12 0.00 0.42  USDA029F_H08_BE518358Ta16P043E12P017H101F1_050.ab1        1   715 (0)  C USDA029R_H08_BE518358Ta16P043E12P017H101R1_050.ab1   (6)   766    55 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  328 nodes

 166 str. conn. components

Path
    1  C USDA029R_H08_BE518358Ta16P043E12P017H101R1_050.ab1   772 
   10    USDA029F_H08_BE518358Ta16P043E12P017H101F1_050.ab1     4 
  368  C USDA029R_H08_BE518358Ta16P043E12P017H101R1_050.ab1   405 
  372    USDA029F_H08_BE518358Ta16P043E12P017H101F1_050.ab1   366 
  384  C USDA029R_H08_BE518358Ta16P043E12P017H101R1_050.ab1   389 
  396    USDA029F_H08_BE518358Ta16P043E12P017H101F1_050.ab1   390 
  400  C USDA029R_H08_BE518358Ta16P043E12P017H101R1_050.ab1   373 
  416    USDA029F_H08_BE518358Ta16P043E12P017H101F1_050.ab1   410 
  432  C USDA029R_H08_BE518358Ta16P043E12P017H101R1_050.ab1   341 
Contig length: old 772, new 772

Contig length: old 772, new 772
New start: 0