No. words: 1623; after pruning: 1597


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.6 (1,1:776)  739  0.13 0.26 0.00  USDA029F_A09_BE518358Ta17P043E12P017H101F1_079.ab1        1   776 (42)  C USDA029R_A09_BE518358Ta17P043E12P017H101R1_079.ab1   (27)   778     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  380 nodes

 192 str. conn. components

Path
    1  C USDA029R_A09_BE518358Ta17P043E12P017H101R1_079.ab1   805 
   47    USDA029F_A09_BE518358Ta17P043E12P017H101F1_079.ab1    18 
  210  C USDA029R_A09_BE518358Ta17P043E12P017H101R1_079.ab1   596 
  214    USDA029F_A09_BE518358Ta17P043E12P017H101F1_079.ab1   185 
  346  C USDA029R_A09_BE518358Ta17P043E12P017H101R1_079.ab1   460 
  350    USDA029F_A09_BE518358Ta17P043E12P017H101F1_079.ab1   321 
  494  C USDA029R_A09_BE518358Ta17P043E12P017H101R1_079.ab1   312 
  654    USDA029F_A09_BE518358Ta17P043E12P017H101F1_079.ab1   625 
  658  C USDA029R_A09_BE518358Ta17P043E12P017H101R1_079.ab1   148 
  706    USDA029F_A09_BE518358Ta17P043E12P017H101F1_079.ab1   677 
  710  C USDA029R_A09_BE518358Ta17P043E12P017H101R1_079.ab1    96 
  742    USDA029F_A09_BE518358Ta17P043E12P017H101F1_079.ab1   713 
  746  C USDA029R_A09_BE518358Ta17P043E12P017H101R1_079.ab1    60 
  770    USDA029F_A09_BE518358Ta17P043E12P017H101F1_079.ab1   741 
  778  C USDA029R_A09_BE518358Ta17P043E12P017H101R1_079.ab1    28 
  794    USDA029F_A09_BE518358Ta17P043E12P017H101F1_079.ab1   765 
Contig length: old 846, new 847

Contig length: old 847, new 847
New start: 0