No. words: 1621; after pruning: 1581


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 16.1 (1,1:778)  746  0.13 0.00 0.00  USDA034F_B03_BE518358Ta18P035F06P017H101F1_029.ab1        1   776 (29)  C USDA034R_B03_BE518358Ta18P035F06P017H101R1_029.ab1   (37)   779     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  386 nodes

 195 str. conn. components

Path
    1  C USDA034R_B03_BE518358Ta18P035F06P017H101R1_029.ab1   816 
   41    USDA034F_B03_BE518358Ta18P035F06P017H101F1_029.ab1     4 
  105  C USDA034R_B03_BE518358Ta18P035F06P017H101R1_029.ab1   712 
  109    USDA034F_B03_BE518358Ta18P035F06P017H101F1_029.ab1    72 
  129  C USDA034R_B03_BE518358Ta18P035F06P017H101R1_029.ab1   688 
  133    USDA034F_B03_BE518358Ta18P035F06P017H101F1_029.ab1    96 
  145  C USDA034R_B03_BE518358Ta18P035F06P017H101R1_029.ab1   672 
  149    USDA034F_B03_BE518358Ta18P035F06P017H101F1_029.ab1   112 
  157  C USDA034R_B03_BE518358Ta18P035F06P017H101R1_029.ab1   660 
  173    USDA034F_B03_BE518358Ta18P035F06P017H101F1_029.ab1   136 
  181  C USDA034R_B03_BE518358Ta18P035F06P017H101R1_029.ab1   636 
  209    USDA034F_B03_BE518358Ta18P035F06P017H101F1_029.ab1   172 
  213  C USDA034R_B03_BE518358Ta18P035F06P017H101R1_029.ab1   604 
  229    USDA034F_B03_BE518358Ta18P035F06P017H101F1_029.ab1   192 
  233  C USDA034R_B03_BE518358Ta18P035F06P017H101R1_029.ab1   584 
  237    USDA034F_B03_BE518358Ta18P035F06P017H101F1_029.ab1   200 
  269  C USDA034R_B03_BE518358Ta18P035F06P017H101R1_029.ab1   548 
  273    USDA034F_B03_BE518358Ta18P035F06P017H101F1_029.ab1   236 
  289  C USDA034R_B03_BE518358Ta18P035F06P017H101R1_029.ab1   528 
  293    USDA034F_B03_BE518358Ta18P035F06P017H101F1_029.ab1   256 
  305  C USDA034R_B03_BE518358Ta18P035F06P017H101R1_029.ab1   512 
  361    USDA034F_B03_BE518358Ta18P035F06P017H101F1_029.ab1   324 
  365  C USDA034R_B03_BE518358Ta18P035F06P017H101R1_029.ab1   452 
  564    USDA034F_B03_BE518358Ta18P035F06P017H101F1_029.ab1   527 
  572  C USDA034R_B03_BE518358Ta18P035F06P017H101R1_029.ab1   245 
  800    USDA034F_B03_BE518358Ta18P035F06P017H101F1_029.ab1   763 
  804  C USDA034R_B03_BE518358Ta18P035F06P017H101R1_029.ab1    13 
  808    USDA034F_B03_BE518358Ta18P035F06P017H101F1_029.ab1   771 
Contig length: old 842, new 842

Contig length: old 842, new 842
New start: 0