No. words: 1529; after pruning: 1489


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.9 (1,1:760)  675  0.70 0.00 0.00  USDA029F_B09_BE518358Ta18P043E12P017H101F1_077.ab1        1   713 (0)  C USDA029R_B09_BE518358Ta18P043E12P017H101R1_077.ab1   (55)   761    49 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  344 nodes

 174 str. conn. components

Path
    1  C USDA029R_B09_BE518358Ta18P043E12P017H101R1_077.ab1   816 
   63    USDA029F_B09_BE518358Ta18P043E12P017H101F1_077.ab1     8 
  115  C USDA029R_B09_BE518358Ta18P043E12P017H101R1_077.ab1   702 
  119    USDA029F_B09_BE518358Ta18P043E12P017H101F1_077.ab1    64 
  131  C USDA029R_B09_BE518358Ta18P043E12P017H101R1_077.ab1   686 
  135    USDA029F_B09_BE518358Ta18P043E12P017H101F1_077.ab1    80 
  244  C USDA029R_B09_BE518358Ta18P043E12P017H101R1_077.ab1   573 
  248    USDA029F_B09_BE518358Ta18P043E12P017H101F1_077.ab1   193 
  252  C USDA029R_B09_BE518358Ta18P043E12P017H101R1_077.ab1   565 
  256    USDA029F_B09_BE518358Ta18P043E12P017H101F1_077.ab1   201 
  268  C USDA029R_B09_BE518358Ta18P043E12P017H101R1_077.ab1   549 
  272    USDA029F_B09_BE518358Ta18P043E12P017H101F1_077.ab1   217 
  360  C USDA029R_B09_BE518358Ta18P043E12P017H101R1_077.ab1   457 
  364    USDA029F_B09_BE518358Ta18P043E12P017H101F1_077.ab1   309 
  444  C USDA029R_B09_BE518358Ta18P043E12P017H101R1_077.ab1   373 
  460    USDA029F_B09_BE518358Ta18P043E12P017H101F1_077.ab1   405 
  476  C USDA029R_B09_BE518358Ta18P043E12P017H101R1_077.ab1   341 
Contig length: old 816, new 816

Contig length: old 816, new 816
New start: 0