No. words: 1651; after pruning: 1611


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.7 (1,1:795)  755  0.13 0.25 0.00  USDA034F_C03_BE518358Ta19P035F06P017H101F1_027.ab1        1   795 (37)  C USDA034R_C03_BE518358Ta19P035F06P017H101R1_027.ab1   (22)   797     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  392 nodes

 198 str. conn. components

Path
    1  C USDA034R_C03_BE518358Ta19P035F06P017H101R1_027.ab1   819 
   43    USDA034F_C03_BE518358Ta19P035F06P017H101F1_027.ab1    19 
   99  C USDA034R_C03_BE518358Ta19P035F06P017H101R1_027.ab1   721 
  103    USDA034F_C03_BE518358Ta19P035F06P017H101F1_027.ab1    79 
  139  C USDA034R_C03_BE518358Ta19P035F06P017H101R1_027.ab1   681 
  143    USDA034F_C03_BE518358Ta19P035F06P017H101F1_027.ab1   119 
  147  C USDA034R_C03_BE518358Ta19P035F06P017H101R1_027.ab1   673 
  151    USDA034F_C03_BE518358Ta19P035F06P017H101F1_027.ab1   127 
  167  C USDA034R_C03_BE518358Ta19P035F06P017H101R1_027.ab1   653 
  199    USDA034F_C03_BE518358Ta19P035F06P017H101F1_027.ab1   175 
  203  C USDA034R_C03_BE518358Ta19P035F06P017H101R1_027.ab1   617 
  207    USDA034F_C03_BE518358Ta19P035F06P017H101F1_027.ab1   183 
  211  C USDA034R_C03_BE518358Ta19P035F06P017H101R1_027.ab1   609 
  215    USDA034F_C03_BE518358Ta19P035F06P017H101F1_027.ab1   191 
  223  C USDA034R_C03_BE518358Ta19P035F06P017H101R1_027.ab1   597 
  235    USDA034F_C03_BE518358Ta19P035F06P017H101F1_027.ab1   211 
  239  C USDA034R_C03_BE518358Ta19P035F06P017H101R1_027.ab1   581 
  247    USDA034F_C03_BE518358Ta19P035F06P017H101F1_027.ab1   223 
  311  C USDA034R_C03_BE518358Ta19P035F06P017H101R1_027.ab1   509 
  431    USDA034F_C03_BE518358Ta19P035F06P017H101F1_027.ab1   407 
  435  C USDA034R_C03_BE518358Ta19P035F06P017H101R1_027.ab1   385 
  532    USDA034F_C03_BE518358Ta19P035F06P017H101F1_027.ab1   508 
  536  C USDA034R_C03_BE518358Ta19P035F06P017H101R1_027.ab1   284 
  576    USDA034F_C03_BE518358Ta19P035F06P017H101F1_027.ab1   552 
  580  C USDA034R_C03_BE518358Ta19P035F06P017H101R1_027.ab1   240 
  808    USDA034F_C03_BE518358Ta19P035F06P017H101F1_027.ab1   784 
Contig length: old 855, new 856

Contig length: old 856, new 856
New start: 0