No. words: 1435; after pruning: 1395


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.9 (1,1:764)  619  0.61 0.15 0.00  USDA029F_C09_BE518358Ta19P043E12P017H101F1_075.ab1        1   651 (0)  C USDA029R_C09_BE518358Ta19P043E12P017H101R1_075.ab1   (18)   766   115 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  310 nodes

 157 str. conn. components

Path
    1  C USDA029R_C09_BE518358Ta19P043E12P017H101R1_075.ab1   784 
   29    USDA029F_C09_BE518358Ta19P043E12P017H101F1_075.ab1    10 
   33  C USDA029R_C09_BE518358Ta19P043E12P017H101R1_075.ab1   752 
   41    USDA029F_C09_BE518358Ta19P043E12P017H101F1_075.ab1    22 
   68  C USDA029R_C09_BE518358Ta19P043E12P017H101R1_075.ab1   717 
   72    USDA029F_C09_BE518358Ta19P043E12P017H101F1_075.ab1    53 
  145  C USDA029R_C09_BE518358Ta19P043E12P017H101R1_075.ab1   640 
  149    USDA029F_C09_BE518358Ta19P043E12P017H101F1_075.ab1   130 
  209  C USDA029R_C09_BE518358Ta19P043E12P017H101R1_075.ab1   576 
  217    USDA029F_C09_BE518358Ta19P043E12P017H101F1_075.ab1   198 
  241  C USDA029R_C09_BE518358Ta19P043E12P017H101R1_075.ab1   544 
  245    USDA029F_C09_BE518358Ta19P043E12P017H101F1_075.ab1   226 
  337  C USDA029R_C09_BE518358Ta19P043E12P017H101R1_075.ab1   448 
  341    USDA029F_C09_BE518358Ta19P043E12P017H101F1_075.ab1   322 
  365  C USDA029R_C09_BE518358Ta19P043E12P017H101R1_075.ab1   420 
  373    USDA029F_C09_BE518358Ta19P043E12P017H101F1_075.ab1   354 
  381  C USDA029R_C09_BE518358Ta19P043E12P017H101R1_075.ab1   404 
  385    USDA029F_C09_BE518358Ta19P043E12P017H101F1_075.ab1   366 
  389  C USDA029R_C09_BE518358Ta19P043E12P017H101R1_075.ab1   396 
  393    USDA029F_C09_BE518358Ta19P043E12P017H101F1_075.ab1   374 
  397  C USDA029R_C09_BE518358Ta19P043E12P017H101R1_075.ab1   388 
  417    USDA029F_C09_BE518358Ta19P043E12P017H101F1_075.ab1   398 
  425  C USDA029R_C09_BE518358Ta19P043E12P017H101R1_075.ab1   360 
  437    USDA029F_C09_BE518358Ta19P043E12P017H101F1_075.ab1   418 
  456  C USDA029R_C09_BE518358Ta19P043E12P017H101R1_075.ab1   329 
  464    USDA029F_C09_BE518358Ta19P043E12P017H101F1_075.ab1   445 
  472  C USDA029R_C09_BE518358Ta19P043E12P017H101R1_075.ab1   313 
Contig length: old 784, new 784

Contig length: old 784, new 784
New start: 0