No. words: 1640; after pruning: 1614


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.3 (1,1:783)  750  0.00 0.00 0.13  USDA034F_E03_BE518358Ta21P035F06P017H101F1_023.ab1        1   784 (26)  C USDA034R_E03_BE518358Ta21P035F06P017H101R1_023.ab1   (47)   783     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  390 nodes

 197 str. conn. components

Path
    1  C USDA034R_E03_BE518358Ta21P035F06P017H101R1_023.ab1   830 
   56    USDA034F_E03_BE518358Ta21P035F06P017H101F1_023.ab1     9 
  148  C USDA034R_E03_BE518358Ta21P035F06P017H101R1_023.ab1   683 
  152    USDA034F_E03_BE518358Ta21P035F06P017H101F1_023.ab1   105 
  156  C USDA034R_E03_BE518358Ta21P035F06P017H101R1_023.ab1   675 
  160    USDA034F_E03_BE518358Ta21P035F06P017H101F1_023.ab1   113 
  176  C USDA034R_E03_BE518358Ta21P035F06P017H101R1_023.ab1   655 
  180    USDA034F_E03_BE518358Ta21P035F06P017H101F1_023.ab1   133 
  184  C USDA034R_E03_BE518358Ta21P035F06P017H101R1_023.ab1   647 
  188    USDA034F_E03_BE518358Ta21P035F06P017H101F1_023.ab1   141 
  192  C USDA034R_E03_BE518358Ta21P035F06P017H101R1_023.ab1   639 
  220    USDA034F_E03_BE518358Ta21P035F06P017H101F1_023.ab1   173 
  224  C USDA034R_E03_BE518358Ta21P035F06P017H101R1_023.ab1   607 
  232    USDA034F_E03_BE518358Ta21P035F06P017H101F1_023.ab1   185 
  260  C USDA034R_E03_BE518358Ta21P035F06P017H101R1_023.ab1   571 
  268    USDA034F_E03_BE518358Ta21P035F06P017H101F1_023.ab1   221 
  288  C USDA034R_E03_BE518358Ta21P035F06P017H101R1_023.ab1   543 
  292    USDA034F_E03_BE518358Ta21P035F06P017H101F1_023.ab1   245 
  336  C USDA034R_E03_BE518358Ta21P035F06P017H101R1_023.ab1   495 
  412    USDA034F_E03_BE518358Ta21P035F06P017H101F1_023.ab1   365 
  416  C USDA034R_E03_BE518358Ta21P035F06P017H101R1_023.ab1   415 
  436    USDA034F_E03_BE518358Ta21P035F06P017H101F1_023.ab1   389 
  452  C USDA034R_E03_BE518358Ta21P035F06P017H101R1_023.ab1   379 
  464    USDA034F_E03_BE518358Ta21P035F06P017H101F1_023.ab1   417 
  468  C USDA034R_E03_BE518358Ta21P035F06P017H101R1_023.ab1   363 
  808    USDA034F_E03_BE518358Ta21P035F06P017H101F1_023.ab1   761 
Contig length: old 856, new 857

Contig length: old 857, new 857
New start: 0