No. words: 1609; after pruning: 1569


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 15.2 (1,1:765)  729  0.39 0.00 0.00  USDA029F_E09_BE518358Ta21P043E12P017H101F1_071.ab1        1   763 (36)  C USDA029R_E09_BE518358Ta21P043E12P017H101R1_071.ab1   (44)   766     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  372 nodes

 188 str. conn. components

Path
    1  C USDA029R_E09_BE518358Ta21P043E12P017H101R1_071.ab1   810 
   52    USDA029F_E09_BE518358Ta21P043E12P017H101F1_071.ab1     8 
  231  C USDA029R_E09_BE518358Ta21P043E12P017H101R1_071.ab1   580 
  235    USDA029F_E09_BE518358Ta21P043E12P017H101F1_071.ab1   191 
  499  C USDA029R_E09_BE518358Ta21P043E12P017H101R1_071.ab1   312 
  575    USDA029F_E09_BE518358Ta21P043E12P017H101F1_071.ab1   531 
  579  C USDA029R_E09_BE518358Ta21P043E12P017H101R1_071.ab1   232 
  591    USDA029F_E09_BE518358Ta21P043E12P017H101F1_071.ab1   547 
  599  C USDA029R_E09_BE518358Ta21P043E12P017H101R1_071.ab1   212 
  611    USDA029F_E09_BE518358Ta21P043E12P017H101F1_071.ab1   567 
  615  C USDA029R_E09_BE518358Ta21P043E12P017H101R1_071.ab1   196 
  647    USDA029F_E09_BE518358Ta21P043E12P017H101F1_071.ab1   603 
  651  C USDA029R_E09_BE518358Ta21P043E12P017H101R1_071.ab1   160 
  663    USDA029F_E09_BE518358Ta21P043E12P017H101F1_071.ab1   619 
  671  C USDA029R_E09_BE518358Ta21P043E12P017H101R1_071.ab1   140 
  699    USDA029F_E09_BE518358Ta21P043E12P017H101F1_071.ab1   655 
  703  C USDA029R_E09_BE518358Ta21P043E12P017H101R1_071.ab1   108 
  794    USDA029F_E09_BE518358Ta21P043E12P017H101F1_071.ab1   750 
  798  C USDA029R_E09_BE518358Ta21P043E12P017H101R1_071.ab1    13 
  802    USDA029F_E09_BE518358Ta21P043E12P017H101F1_071.ab1   758 
Contig length: old 843, new 843

Contig length: old 843, new 843
New start: 0