No. words: 1589; after pruning: 1535


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.1 (1,1:782)  740  0.39 0.00 0.00  USDA034F_F03_BE518358Ta22P035F06P017H101F1_021.ab1        1   773 (0)  C USDA034R_F03_BE518358Ta22P035F06P017H101R1_021.ab1   (33)   783    11 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  378 nodes

 191 str. conn. components

Path
    1  C USDA034R_F03_BE518358Ta22P035F06P017H101R1_021.ab1   816 
   38    USDA034F_F03_BE518358Ta22P035F06P017H101F1_021.ab1     5 
  126  C USDA034R_F03_BE518358Ta22P035F06P017H101R1_021.ab1   691 
  130    USDA034F_F03_BE518358Ta22P035F06P017H101F1_021.ab1    97 
  151  C USDA034R_F03_BE518358Ta22P035F06P017H101R1_021.ab1   666 
  159    USDA034F_F03_BE518358Ta22P035F06P017H101F1_021.ab1   126 
  167  C USDA034R_F03_BE518358Ta22P035F06P017H101R1_021.ab1   650 
  187    USDA034F_F03_BE518358Ta22P035F06P017H101F1_021.ab1   154 
  191  C USDA034R_F03_BE518358Ta22P035F06P017H101R1_021.ab1   626 
  195    USDA034F_F03_BE518358Ta22P035F06P017H101F1_021.ab1   162 
  211  C USDA034R_F03_BE518358Ta22P035F06P017H101R1_021.ab1   606 
  215    USDA034F_F03_BE518358Ta22P035F06P017H101F1_021.ab1   182 
  219  C USDA034R_F03_BE518358Ta22P035F06P017H101R1_021.ab1   598 
  227    USDA034F_F03_BE518358Ta22P035F06P017H101F1_021.ab1   194 
  247  C USDA034R_F03_BE518358Ta22P035F06P017H101R1_021.ab1   570 
  251    USDA034F_F03_BE518358Ta22P035F06P017H101F1_021.ab1   218 
  267  C USDA034R_F03_BE518358Ta22P035F06P017H101R1_021.ab1   550 
  271    USDA034F_F03_BE518358Ta22P035F06P017H101F1_021.ab1   238 
  283  C USDA034R_F03_BE518358Ta22P035F06P017H101R1_021.ab1   534 
  287    USDA034F_F03_BE518358Ta22P035F06P017H101F1_021.ab1   254 
  307  C USDA034R_F03_BE518358Ta22P035F06P017H101R1_021.ab1   510 
  319    USDA034F_F03_BE518358Ta22P035F06P017H101F1_021.ab1   286 
  323  C USDA034R_F03_BE518358Ta22P035F06P017H101R1_021.ab1   494 
  363    USDA034F_F03_BE518358Ta22P035F06P017H101F1_021.ab1   330 
  367  C USDA034R_F03_BE518358Ta22P035F06P017H101R1_021.ab1   450 
  375    USDA034F_F03_BE518358Ta22P035F06P017H101F1_021.ab1   342 
  379  C USDA034R_F03_BE518358Ta22P035F06P017H101R1_021.ab1   438 
  451    USDA034F_F03_BE518358Ta22P035F06P017H101F1_021.ab1   418 
  455  C USDA034R_F03_BE518358Ta22P035F06P017H101R1_021.ab1   362 
  637    USDA034F_F03_BE518358Ta22P035F06P017H101F1_021.ab1   604 
  653  C USDA034R_F03_BE518358Ta22P035F06P017H101R1_021.ab1   164 
Contig length: old 816, new 816

Contig length: old 816, new 816
New start: 0