No. words: 1634; after pruning: 1608


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 16.9 (1,1:780)  747  0.13 0.00 0.00  USDA034F_G03_BE518358Ta23P035F06P017H101F1_019.ab1        2   781 (30)  C USDA034R_G03_BE518358Ta23P035F06P017H101R1_019.ab1   (43)   780     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  390 nodes

 197 str. conn. components

Path
    1  C USDA034R_G03_BE518358Ta23P035F06P017H101R1_019.ab1   823 
   47    USDA034F_G03_BE518358Ta23P035F06P017H101F1_019.ab1     5 
  183  C USDA034R_G03_BE518358Ta23P035F06P017H101R1_019.ab1   641 
  199    USDA034F_G03_BE518358Ta23P035F06P017H101F1_019.ab1   157 
  203  C USDA034R_G03_BE518358Ta23P035F06P017H101R1_019.ab1   621 
  211    USDA034F_G03_BE518358Ta23P035F06P017H101F1_019.ab1   169 
  219  C USDA034R_G03_BE518358Ta23P035F06P017H101R1_019.ab1   605 
  227    USDA034F_G03_BE518358Ta23P035F06P017H101F1_019.ab1   185 
  231  C USDA034R_G03_BE518358Ta23P035F06P017H101R1_019.ab1   593 
  235    USDA034F_G03_BE518358Ta23P035F06P017H101F1_019.ab1   193 
  347  C USDA034R_G03_BE518358Ta23P035F06P017H101R1_019.ab1   477 
  351    USDA034F_G03_BE518358Ta23P035F06P017H101F1_019.ab1   309 
  355  C USDA034R_G03_BE518358Ta23P035F06P017H101R1_019.ab1   469 
  367    USDA034F_G03_BE518358Ta23P035F06P017H101F1_019.ab1   325 
  419  C USDA034R_G03_BE518358Ta23P035F06P017H101R1_019.ab1   405 
  427    USDA034F_G03_BE518358Ta23P035F06P017H101F1_019.ab1   385 
  447  C USDA034R_G03_BE518358Ta23P035F06P017H101R1_019.ab1   377 
  531    USDA034F_G03_BE518358Ta23P035F06P017H101F1_019.ab1   489 
  535  C USDA034R_G03_BE518358Ta23P035F06P017H101R1_019.ab1   289 
  811    USDA034F_G03_BE518358Ta23P035F06P017H101F1_019.ab1   769 
Contig length: old 853, new 853

Contig length: old 853, new 853
New start: 0