No. words: 1641; after pruning: 1615


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 13.9 (1,1:796)  738  0.38 0.13 0.25  USDA034F_A01_BE518358Td01P035F06P017H101F1_015.ab1        4   794 (19)  C USDA034R_A01_BE518358Td01P035F06P017H101R1_015.ab1   (35)   793     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  380 nodes

 192 str. conn. components

Path
    1  C USDA034R_A01_BE518358Td01P035F06P017H101R1_015.ab1   828 
   46    USDA034F_A01_BE518358Td01P035F06P017H101F1_015.ab1    13 
   90  C USDA034R_A01_BE518358Td01P035F06P017H101R1_015.ab1   739 
   97    USDA034F_A01_BE518358Td01P035F06P017H101F1_015.ab1    65 
  125  C USDA034R_A01_BE518358Td01P035F06P017H101R1_015.ab1   704 
  129    USDA034F_A01_BE518358Td01P035F06P017H101F1_015.ab1    97 
  141  C USDA034R_A01_BE518358Td01P035F06P017H101R1_015.ab1   688 
  149    USDA034F_A01_BE518358Td01P035F06P017H101F1_015.ab1   117 
  157  C USDA034R_A01_BE518358Td01P035F06P017H101R1_015.ab1   672 
  161    USDA034F_A01_BE518358Td01P035F06P017H101F1_015.ab1   129 
  341  C USDA034R_A01_BE518358Td01P035F06P017H101R1_015.ab1   488 
  345    USDA034F_A01_BE518358Td01P035F06P017H101F1_015.ab1   313 
  349  C USDA034R_A01_BE518358Td01P035F06P017H101R1_015.ab1   480 
  353    USDA034F_A01_BE518358Td01P035F06P017H101F1_015.ab1   321 
  361  C USDA034R_A01_BE518358Td01P035F06P017H101R1_015.ab1   468 
  365    USDA034F_A01_BE518358Td01P035F06P017H101F1_015.ab1   333 
  469  C USDA034R_A01_BE518358Td01P035F06P017H101R1_015.ab1   360 
  819    USDA034F_A01_BE518358Td01P035F06P017H101F1_015.ab1   788 
Contig length: old 844, new 844

Contig length: old 844, new 844
New start: 0