No. words: 1639; after pruning: 1613


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.3 (1,1:781)  740  0.00 0.13 0.26  USDA034F_B01_BE518358Td02P035F06P017H101F1_013.ab1        1   783 (31)  C USDA034R_B01_BE518358Td02P035F06P017H101R1_013.ab1   (43)   782     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  382 nodes

 193 str. conn. components

Path
    1  C USDA034R_B01_BE518358Td02P035F06P017H101R1_013.ab1   825 
   53    USDA034F_B01_BE518358Td02P035F06P017H101F1_013.ab1    10 
   73  C USDA034R_B01_BE518358Td02P035F06P017H101R1_013.ab1   753 
   86    USDA034F_B01_BE518358Td02P035F06P017H101F1_013.ab1    42 
  194  C USDA034R_B01_BE518358Td02P035F06P017H101R1_013.ab1   632 
  198    USDA034F_B01_BE518358Td02P035F06P017H101F1_013.ab1   154 
  358  C USDA034R_B01_BE518358Td02P035F06P017H101R1_013.ab1   468 
  362    USDA034F_B01_BE518358Td02P035F06P017H101F1_013.ab1   318 
  466  C USDA034R_B01_BE518358Td02P035F06P017H101R1_013.ab1   360 
  770    USDA034F_B01_BE518358Td02P035F06P017H101F1_013.ab1   726 
  778  C USDA034R_B01_BE518358Td02P035F06P017H101R1_013.ab1    48 
  806    USDA034F_B01_BE518358Td02P035F06P017H101F1_013.ab1   762 
Contig length: old 857, new 858

Contig length: old 858, new 858
New start: 0