No. words: 1577; after pruning: 1523


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.5 (1,1:757)  716  0.66 0.00 0.13  USDA029F_B07_BE518358Td02P043E12P017H101F1_061.ab1        1   758 (14)  C USDA029R_B07_BE518358Td02P043E12P017H101R1_061.ab1   (48)   757     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  366 nodes

 185 str. conn. components

Path
    1  C USDA029R_B07_BE518358Td02P043E12P017H101R1_061.ab1   805 
   52    USDA029F_B07_BE518358Td02P043E12P017H101F1_061.ab1     4 
   60  C USDA029R_B07_BE518358Td02P043E12P017H101R1_061.ab1   746 
   64    USDA029F_B07_BE518358Td02P043E12P017H101F1_061.ab1    16 
  182  C USDA029R_B07_BE518358Td02P043E12P017H101R1_061.ab1   624 
  186    USDA029F_B07_BE518358Td02P043E12P017H101F1_061.ab1   138 
  202  C USDA029R_B07_BE518358Td02P043E12P017H101R1_061.ab1   604 
  206    USDA029F_B07_BE518358Td02P043E12P017H101F1_061.ab1   158 
  214  C USDA029R_B07_BE518358Td02P043E12P017H101R1_061.ab1   592 
  218    USDA029F_B07_BE518358Td02P043E12P017H101F1_061.ab1   170 
  234  C USDA029R_B07_BE518358Td02P043E12P017H101R1_061.ab1   572 
  238    USDA029F_B07_BE518358Td02P043E12P017H101F1_061.ab1   190 
  270  C USDA029R_B07_BE518358Td02P043E12P017H101R1_061.ab1   536 
  274    USDA029F_B07_BE518358Td02P043E12P017H101F1_061.ab1   226 
  454  C USDA029R_B07_BE518358Td02P043E12P017H101R1_061.ab1   352 
  458    USDA029F_B07_BE518358Td02P043E12P017H101F1_061.ab1   410 
  502  C USDA029R_B07_BE518358Td02P043E12P017H101R1_061.ab1   304 
  518    USDA029F_B07_BE518358Td02P043E12P017H101F1_061.ab1   470 
  530  C USDA029R_B07_BE518358Td02P043E12P017H101R1_061.ab1   276 
  578    USDA029F_B07_BE518358Td02P043E12P017H101F1_061.ab1   530 
  582  C USDA029R_B07_BE518358Td02P043E12P017H101R1_061.ab1   224 
  598    USDA029F_B07_BE518358Td02P043E12P017H101F1_061.ab1   550 
  602  C USDA029R_B07_BE518358Td02P043E12P017H101R1_061.ab1   204 
  670    USDA029F_B07_BE518358Td02P043E12P017H101F1_061.ab1   622 
  674  C USDA029R_B07_BE518358Td02P043E12P017H101R1_061.ab1   132 
  799    USDA029F_B07_BE518358Td02P043E12P017H101F1_061.ab1   752 
Contig length: old 819, new 819

Contig length: old 819, new 820
New start: 0 
I Change at: 797; seg lengths: entry 1, contig 0