No. words: 1621; after pruning: 1595


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.9 (1,1:760)  733  0.00 0.00 0.00  USDA034F_C01_BE518358Td03P035F06P017H101F1_011.ab1        1   761 (52)  C USDA034R_C01_BE518358Td03P035F06P017H101R1_011.ab1   (47)   761     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  382 nodes

 193 str. conn. components

Path
    1  C USDA034R_C01_BE518358Td03P035F06P017H101R1_011.ab1   808 
   56    USDA034F_C01_BE518358Td03P035F06P017H101F1_011.ab1     9 
   60  C USDA034R_C01_BE518358Td03P035F06P017H101R1_011.ab1   749 
   76    USDA034F_C01_BE518358Td03P035F06P017H101F1_011.ab1    29 
  136  C USDA034R_C01_BE518358Td03P035F06P017H101R1_011.ab1   673 
  144    USDA034F_C01_BE518358Td03P035F06P017H101F1_011.ab1    97 
  152  C USDA034R_C01_BE518358Td03P035F06P017H101R1_011.ab1   657 
  160    USDA034F_C01_BE518358Td03P035F06P017H101F1_011.ab1   113 
  168  C USDA034R_C01_BE518358Td03P035F06P017H101R1_011.ab1   641 
  220    USDA034F_C01_BE518358Td03P035F06P017H101F1_011.ab1   173 
  224  C USDA034R_C01_BE518358Td03P035F06P017H101R1_011.ab1   585 
  232    USDA034F_C01_BE518358Td03P035F06P017H101F1_011.ab1   185 
  236  C USDA034R_C01_BE518358Td03P035F06P017H101R1_011.ab1   573 
  240    USDA034F_C01_BE518358Td03P035F06P017H101F1_011.ab1   193 
  244  C USDA034R_C01_BE518358Td03P035F06P017H101R1_011.ab1   565 
  248    USDA034F_C01_BE518358Td03P035F06P017H101F1_011.ab1   201 
  252  C USDA034R_C01_BE518358Td03P035F06P017H101R1_011.ab1   557 
  256    USDA034F_C01_BE518358Td03P035F06P017H101F1_011.ab1   209 
  260  C USDA034R_C01_BE518358Td03P035F06P017H101R1_011.ab1   549 
  264    USDA034F_C01_BE518358Td03P035F06P017H101F1_011.ab1   217 
  280  C USDA034R_C01_BE518358Td03P035F06P017H101R1_011.ab1   529 
  284    USDA034F_C01_BE518358Td03P035F06P017H101F1_011.ab1   237 
  296  C USDA034R_C01_BE518358Td03P035F06P017H101R1_011.ab1   513 
  804    USDA034F_C01_BE518358Td03P035F06P017H101F1_011.ab1   757 
Contig length: old 860, new 860

Contig length: old 860, new 860
New start: 0