No. words: 1588; after pruning: 1548


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 16.7 (1,1:778)  744  0.13 0.00 0.00  USDA034F_D01_BE518358Td04P035F06P017H101F1_009.ab1        3   777 (34)  C USDA034R_D01_BE518358Td04P035F06P017H101R1_009.ab1   (0)   777     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  386 nodes

 195 str. conn. components

Path
    1    USDA034F_D01_BE518358Td04P035F06P017H101F1_009.ab1     1 
   38  C USDA034R_D01_BE518358Td04P035F06P017H101R1_009.ab1   742 
   42    USDA034F_D01_BE518358Td04P035F06P017H101F1_009.ab1    42 
   82  C USDA034R_D01_BE518358Td04P035F06P017H101R1_009.ab1   698 
   98    USDA034F_D01_BE518358Td04P035F06P017H101F1_009.ab1    98 
  102  C USDA034R_D01_BE518358Td04P035F06P017H101R1_009.ab1   678 
  114    USDA034F_D01_BE518358Td04P035F06P017H101F1_009.ab1   114 
  118  C USDA034R_D01_BE518358Td04P035F06P017H101R1_009.ab1   662 
  170    USDA034F_D01_BE518358Td04P035F06P017H101F1_009.ab1   170 
  178  C USDA034R_D01_BE518358Td04P035F06P017H101R1_009.ab1   602 
  202    USDA034F_D01_BE518358Td04P035F06P017H101F1_009.ab1   202 
  214  C USDA034R_D01_BE518358Td04P035F06P017H101R1_009.ab1   566 
  222    USDA034F_D01_BE518358Td04P035F06P017H101F1_009.ab1   222 
  242  C USDA034R_D01_BE518358Td04P035F06P017H101R1_009.ab1   538 
  246    USDA034F_D01_BE518358Td04P035F06P017H101F1_009.ab1   246 
  250  C USDA034R_D01_BE518358Td04P035F06P017H101R1_009.ab1   530 
  386    USDA034F_D01_BE518358Td04P035F06P017H101F1_009.ab1   386 
  390  C USDA034R_D01_BE518358Td04P035F06P017H101R1_009.ab1   390 
  418    USDA034F_D01_BE518358Td04P035F06P017H101F1_009.ab1   418 
  422  C USDA034R_D01_BE518358Td04P035F06P017H101R1_009.ab1   358 
  765    USDA034F_D01_BE518358Td04P035F06P017H101F1_009.ab1   765 
  769  C USDA034R_D01_BE518358Td04P035F06P017H101R1_009.ab1    11 
  773    USDA034F_D01_BE518358Td04P035F06P017H101F1_009.ab1   773 
Contig length: old 811, new 811

Contig length: old 811, new 811
New start: 0