No. words: 1531; after pruning: 1505


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.3 (1,1:765)  685  0.82 0.14 0.14  USDA029F_D07_BE518358Td04P043E12P017H101F1_057.ab1        1   735 (0)  C USDA029R_D07_BE518358Td04P043E12P017H101R1_057.ab1   (30)   766    32 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  346 nodes

 175 str. conn. components

Path
    1  C USDA029R_D07_BE518358Td04P043E12P017H101R1_057.ab1   796 
   39    USDA029F_D07_BE518358Td04P043E12P017H101F1_057.ab1     9 
  234  C USDA029R_D07_BE518358Td04P043E12P017H101R1_057.ab1   562 
  238    USDA029F_D07_BE518358Td04P043E12P017H101F1_057.ab1   208 
  242  C USDA029R_D07_BE518358Td04P043E12P017H101R1_057.ab1   554 
  246    USDA029F_D07_BE518358Td04P043E12P017H101F1_057.ab1   216 
  506  C USDA029R_D07_BE518358Td04P043E12P017H101R1_057.ab1   290 
  510    USDA029F_D07_BE518358Td04P043E12P017H101F1_057.ab1   480 
  514  C USDA029R_D07_BE518358Td04P043E12P017H101R1_057.ab1   282 
  522    USDA029F_D07_BE518358Td04P043E12P017H101F1_057.ab1   492 
  530  C USDA029R_D07_BE518358Td04P043E12P017H101R1_057.ab1   266 
  578    USDA029F_D07_BE518358Td04P043E12P017H101F1_057.ab1   548 
  582  C USDA029R_D07_BE518358Td04P043E12P017H101R1_057.ab1   214 
  594    USDA029F_D07_BE518358Td04P043E12P017H101F1_057.ab1   564 
  602  C USDA029R_D07_BE518358Td04P043E12P017H101R1_057.ab1   194 
  614    USDA029F_D07_BE518358Td04P043E12P017H101F1_057.ab1   584 
  618  C USDA029R_D07_BE518358Td04P043E12P017H101R1_057.ab1   178 
Contig length: old 796, new 795

Contig length: old 795, new 796
New start: 0 
S Change at: 35; seg lengths: entry 1, contig 1
I Change at: 48; seg lengths: entry 1, contig 0
S Change at: 671; seg lengths: entry 1, contig 1