No. words: 1639; after pruning: 1613


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.6 (1,1:783)  749  0.00 0.00 0.13  USDA034F_E01_BE518358Td05P035F06P017H101F1_007.ab1        1   784 (27)  C USDA034R_E01_BE518358Td05P035F06P017H101R1_007.ab1   (45)   783     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  390 nodes

 197 str. conn. components

Path
    1  C USDA034R_E01_BE518358Td05P035F06P017H101R1_007.ab1   828 
   49    USDA034F_E01_BE518358Td05P035F06P017H101F1_007.ab1     4 
   53  C USDA034R_E01_BE518358Td05P035F06P017H101R1_007.ab1   776 
   57    USDA034F_E01_BE518358Td05P035F06P017H101F1_007.ab1    12 
  133  C USDA034R_E01_BE518358Td05P035F06P017H101R1_007.ab1   696 
  137    USDA034F_E01_BE518358Td05P035F06P017H101F1_007.ab1    92 
  141  C USDA034R_E01_BE518358Td05P035F06P017H101R1_007.ab1   688 
  165    USDA034F_E01_BE518358Td05P035F06P017H101F1_007.ab1   120 
  169  C USDA034R_E01_BE518358Td05P035F06P017H101R1_007.ab1   660 
  205    USDA034F_E01_BE518358Td05P035F06P017H101F1_007.ab1   160 
  209  C USDA034R_E01_BE518358Td05P035F06P017H101R1_007.ab1   620 
  217    USDA034F_E01_BE518358Td05P035F06P017H101F1_007.ab1   172 
  229  C USDA034R_E01_BE518358Td05P035F06P017H101R1_007.ab1   600 
  233    USDA034F_E01_BE518358Td05P035F06P017H101F1_007.ab1   188 
  237  C USDA034R_E01_BE518358Td05P035F06P017H101R1_007.ab1   592 
  241    USDA034F_E01_BE518358Td05P035F06P017H101F1_007.ab1   196 
  249  C USDA034R_E01_BE518358Td05P035F06P017H101R1_007.ab1   580 
  257    USDA034F_E01_BE518358Td05P035F06P017H101F1_007.ab1   212 
  265  C USDA034R_E01_BE518358Td05P035F06P017H101R1_007.ab1   564 
  269    USDA034F_E01_BE518358Td05P035F06P017H101F1_007.ab1   224 
  281  C USDA034R_E01_BE518358Td05P035F06P017H101R1_007.ab1   548 
  285    USDA034F_E01_BE518358Td05P035F06P017H101F1_007.ab1   240 
  289  C USDA034R_E01_BE518358Td05P035F06P017H101R1_007.ab1   540 
  293    USDA034F_E01_BE518358Td05P035F06P017H101F1_007.ab1   248 
  297  C USDA034R_E01_BE518358Td05P035F06P017H101R1_007.ab1   532 
  793    USDA034F_E01_BE518358Td05P035F06P017H101F1_007.ab1   748 
  797  C USDA034R_E01_BE518358Td05P035F06P017H101R1_007.ab1    32 
  809    USDA034F_E01_BE518358Td05P035F06P017H101F1_007.ab1   764 
Contig length: old 855, new 856

Contig length: old 856, new 856
New start: 0