No. words: 1264; after pruning: 1238


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.9 (1,1:764)  477  0.60 0.00 0.00  USDA029F_E07_BE518358Td05P043E12P017H101F1_055.ab1        5   503 (0)  C USDA029R_E07_BE518358Td05P043E12P017H101R1_055.ab1   (0)   761   263 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  244 nodes

 124 str. conn. components

Path
    1    USDA029F_E07_BE518358Td05P043E12P017H101F1_055.ab1     1 
  166  C USDA029R_E07_BE518358Td05P043E12P017H101R1_055.ab1   600 
  174    USDA029F_E07_BE518358Td05P043E12P017H101F1_055.ab1   174 
  186  C USDA029R_E07_BE518358Td05P043E12P017H101R1_055.ab1   580 
  190    USDA029F_E07_BE518358Td05P043E12P017H101F1_055.ab1   190 
  198  C USDA029R_E07_BE518358Td05P043E12P017H101R1_055.ab1   568 
  206    USDA029F_E07_BE518358Td05P043E12P017H101F1_055.ab1   206 
  218  C USDA029R_E07_BE518358Td05P043E12P017H101R1_055.ab1   548 
  222    USDA029F_E07_BE518358Td05P043E12P017H101F1_055.ab1   222 
  234  C USDA029R_E07_BE518358Td05P043E12P017H101R1_055.ab1   532 
  250    USDA029F_E07_BE518358Td05P043E12P017H101F1_055.ab1   250 
  294  C USDA029R_E07_BE518358Td05P043E12P017H101R1_055.ab1   472 
  306    USDA029F_E07_BE518358Td05P043E12P017H101F1_055.ab1   306 
  310  C USDA029R_E07_BE518358Td05P043E12P017H101R1_055.ab1   456 
  318    USDA029F_E07_BE518358Td05P043E12P017H101F1_055.ab1   318 
  358  C USDA029R_E07_BE518358Td05P043E12P017H101R1_055.ab1   408 
  386    USDA029F_E07_BE518358Td05P043E12P017H101F1_055.ab1   386 
  394  C USDA029R_E07_BE518358Td05P043E12P017H101R1_055.ab1   372 
  422    USDA029F_E07_BE518358Td05P043E12P017H101F1_055.ab1   422 
  426  C USDA029R_E07_BE518358Td05P043E12P017H101R1_055.ab1   340 
Contig length: old 765, new 765

Contig length: old 765, new 765
New start: 0