No. words: 1638; after pruning: 1612


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 16.9 (1,1:777)  748  0.00 0.00 0.00  USDA034F_F01_BE518358Td06P035F06P017H101F1_005.ab1        1   777 (37)  C USDA034R_F01_BE518358Td06P035F06P017H101R1_005.ab1   (46)   778     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  390 nodes

 197 str. conn. components

Path
    1  C USDA034R_F01_BE518358Td06P035F06P017H101R1_005.ab1   824 
   55    USDA034F_F01_BE518358Td06P035F06P017H101F1_005.ab1     9 
   63  C USDA034R_F01_BE518358Td06P035F06P017H101R1_005.ab1   762 
   71    USDA034F_F01_BE518358Td06P035F06P017H101F1_005.ab1    25 
  139  C USDA034R_F01_BE518358Td06P035F06P017H101R1_005.ab1   686 
  143    USDA034F_F01_BE518358Td06P035F06P017H101F1_005.ab1    97 
  151  C USDA034R_F01_BE518358Td06P035F06P017H101R1_005.ab1   674 
  159    USDA034F_F01_BE518358Td06P035F06P017H101F1_005.ab1   113 
  163  C USDA034R_F01_BE518358Td06P035F06P017H101R1_005.ab1   662 
  215    USDA034F_F01_BE518358Td06P035F06P017H101F1_005.ab1   169 
  223  C USDA034R_F01_BE518358Td06P035F06P017H101R1_005.ab1   602 
  239    USDA034F_F01_BE518358Td06P035F06P017H101F1_005.ab1   193 
  263  C USDA034R_F01_BE518358Td06P035F06P017H101R1_005.ab1   562 
  271    USDA034F_F01_BE518358Td06P035F06P017H101F1_005.ab1   225 
  279  C USDA034R_F01_BE518358Td06P035F06P017H101R1_005.ab1   546 
  283    USDA034F_F01_BE518358Td06P035F06P017H101F1_005.ab1   237 
  287  C USDA034R_F01_BE518358Td06P035F06P017H101R1_005.ab1   538 
  291    USDA034F_F01_BE518358Td06P035F06P017H101F1_005.ab1   245 
  295  C USDA034R_F01_BE518358Td06P035F06P017H101R1_005.ab1   530 
  299    USDA034F_F01_BE518358Td06P035F06P017H101F1_005.ab1   253 
  307  C USDA034R_F01_BE518358Td06P035F06P017H101R1_005.ab1   518 
  659    USDA034F_F01_BE518358Td06P035F06P017H101F1_005.ab1   613 
  663  C USDA034R_F01_BE518358Td06P035F06P017H101R1_005.ab1   162 
  803    USDA034F_F01_BE518358Td06P035F06P017H101F1_005.ab1   757 
Contig length: old 860, new 860

Contig length: old 860, new 860
New start: 0